ModCRE DB

Transcription factor

A0AV05 - ZNF517

Zinc finger protein 517

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 492 aa

34 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)28
MotifPredictionSourceDNA bindingSupportLogoActions
M00960_2.00 NN 70-40% CisBP TGCATCCC 58.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 57.8% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 57.6% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 56.4% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 56.4% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 56.4% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 56.4% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 55.9% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.5% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 55.5% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 55.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 55.2% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 55.2% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 55.2% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.3% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 54.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 53.0% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 52.8% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 52.6% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 51.4% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 51.2% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 51.0% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 50.9% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 50.5% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 50.4% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 50.4% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 50.3% identity Open · Scan
MA0516.1 NN 70-40% JASPAR GCCCCGCCCCCTCCC 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_A0AV05_A0AV05_HUMAN:394:442_1llm_D_1 ModCRE Homology model CCCCCGAGCGAG Region 394-442 · 1 3D model Open · Scan
TFS_tr_A0AV05_A0AV05_HUMAN:172:447_5wjq_D_1 ModCRE Homology model CCCACGGGCCCCGTTTCCCGGGCCGGGG Region 172-447 · 1 3D model Open · Scan
TFS_tr_A0AV05_A0AV05_HUMAN:181:470_7w1m_H_1 ModCRE Homology model TCCGTCAGGCGCCCGCCGAAGGTATGGATCCTTGCCGCCCAGA Region 181-470 · 1 3D model Open · Scan
TFS_tr_A0AV05_A0AV05_HUMAN:186:339_2i13_A_1 ModCRE Homology model ATTCAAGCTACCCTAACTGAG Region 186-339 · 1 3D model Open · Scan
TFS_tr_A0AV05_A0AV05_HUMAN:204:474_5v3j_E_1 ModCRE Homology model CCCCCCATAAAACGAGCCCCCCCCAA Region 204-474 · 1 3D model Open · Scan
TFS_tr_A0AV05_A0AV05_HUMAN:204:474_5v3m_C_1 ModCRE Homology model CGCCCCCAATCGAGATGCCCTCCCGC Region 204-474 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 492 aa
172-474

Region 172-474 6 PWM

Residues
303 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 172-4746 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_A0AV05_A0AV05_HUMAN:394:442_1llm_D_1 1llm 394-442 View model · PDB
Predicted = Low TFS_tr_A0AV05_A0AV05_HUMAN:172:447_5wjq_D_1 5wjq 172-447 View model · PDB
Predicted = Low TFS_tr_A0AV05_A0AV05_HUMAN:181:470_7w1m_H_1 7w1m 181-470 View model · PDB
Predicted = Low TFS_tr_A0AV05_A0AV05_HUMAN:186:339_2i13_A_1 2i13 186-339 View model · PDB
Predicted = Low TFS_tr_A0AV05_A0AV05_HUMAN:204:474_5v3j_E_1 5v3j 204-474 View model · PDB
Predicted = Low TFS_tr_A0AV05_A0AV05_HUMAN:204:474_5v3m_C_1 5v3m 204-474 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 172:483 186 339 P:A · DNA:C,D 51.3% / 64.3% 100 View · PDB TFS_tr_A0AV05_A0AV05_HUMAN:186:339_2i13_A_1
1 1llm 172:483 394,394 442,442 P:C,D · DNA:A,B 49.0% / 59.2% 56,57 View · PDB DIMER_tr_A0AV05_A0AV05_HUMAN:394:442_1llm_D_1
1 5wjq 172:483 172 447 P:D · DNA:A,B 48.9% / 60.3% 97 View · PDB TFS_tr_A0AV05_A0AV05_HUMAN:172:447_5wjq_D_1
2 5v3m 172:483 204 474 P:C · DNA:A,B 46.7% / 59.8% 97 View · PDB TFS_tr_A0AV05_A0AV05_HUMAN:204:474_5v3m_C_1
3 5v3j 172:483 204 474 P:E · DNA:A,B 46.7% / 59.8% 97 View · PDB TFS_tr_A0AV05_A0AV05_HUMAN:204:474_5v3j_E_1
5 7w1m 172:483 181 470 P:H · DNA:F,G 32.2% / 50.0% 90 View · PDB TFS_tr_A0AV05_A0AV05_HUMAN:181:470_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
14-54PF01352KRAB boxNo overlap with loaded model regions
181-199PF00096Zinc finger, C2H2 typeoverlaps 172-474
205-227PF00096Zinc finger, C2H2 typeoverlaps 172-474
233-255PF00096Zinc finger, C2H2 typeoverlaps 172-474
261-283PF00096Zinc finger, C2H2 typeoverlaps 172-474
289-311PF00096Zinc finger, C2H2 typeoverlaps 172-474
317-339PF00096Zinc finger, C2H2 typeoverlaps 172-474
368-390PF00096Zinc finger, C2H2 typeoverlaps 172-474
396-418PF00096Zinc finger, C2H2 typeoverlaps 172-474
424-446PF00096Zinc finger, C2H2 typeoverlaps 172-474
452-474PF00096Zinc finger, C2H2 typeoverlaps 172-474