ModCRE DB

Transcription factor

A4D2L0 - LOC402257

UniProtKB entry deleted

18 Generated PWM 10 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)8
MotifPredictionSourceDNA bindingSupportLogoActions
MA0028.1 NN 70-40% JASPAR GAGCCGGAAG 65.3% identity Open · Scan
M03010_2.00 NN 70-40% CisBP ACCGGAAGTA 60.9% identity Open · Scan
M04733_2.00 NN 70-40% CisBP ACCGGAAGTG 57.7% identity Open · Scan
MA0759.1 NN 70-40% JASPAR ACCGGAAGTA 57.7% identity Open · Scan
M01489_2.00 NN 70-40% CisBP AACCGGAAGT 53.3% identity Open · Scan
M03001_2.00 NN 70-40% CisBP ACCGGAAGTG 53.3% identity Open · Scan
MA0076.1 NN 70-40% JASPAR ACCGGAAGT 53.3% identity Open · Scan
MA1484.1 NN 70-40% JASPAR GACCGGAAGT 50.0% identity Open · Scan
ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_A4D2L0_A4D2L0_HUMAN:12:50_3mfk_B_1 ModCRE Homology model AAGAAAGTGACCCCT Region 12-50 · 1 3D model Open · Scan
DIMER_tr_A4D2L0_A4D2L0_HUMAN:12:50_3ri4_D_1 ModCRE Homology model AGGGGAAAGGGGTCC Region 12-50 · 1 3D model Open · Scan
DIMER_tr_A4D2L0_A4D2L0_HUMAN:12:50_5e8i_G_1 ModCRE Homology model AGTTTCCGTT Region 12-50 · 1 3D model Open · Scan
DIMER_tr_A4D2L0_A4D2L0_HUMAN:12:52_2nny_B_1 ModCRE Homology model AAAAGGAAAGGTCTTCCCTTTT Region 12-52 · 1 3D model Open · Scan
DIMER_tr_A4D2L0_A4D2L0_HUMAN:12:55_1dux_F_1 ModCRE Homology model AAAACGGAAATTT Region 12-55 · 1 3D model Open · Scan
TFS_tr_A4D2L0_A4D2L0_HUMAN:12:55_1dux_F_1 ModCRE Homology model AAAACGGTAATTT Region 12-55 · 1 3D model Open · Scan
TFS_tr_A4D2L0_A4D2L0_HUMAN:12:56_1bc7_C_1 ModCRE Homology model AAAAGGAAATT Region 12-56 · 1 3D model Open · Scan
TFS_tr_A4D2L0_A4D2L0_HUMAN:12:56_1bc8_C_1 ModCRE Homology model AAAGGAACT Region 12-56 · 1 3D model Open · Scan
TFS_tr_A4D2L0_A4D2L0_HUMAN:12:56_1hbx_G_1 ModCRE Homology model ATTACCGAAGTTTTAAGT Region 12-56 · 1 3D model Open · Scan
TFS_tr_A4D2L0_A4D2L0_HUMAN:12:56_1k6o_A_1 ModCRE Homology model AGTTAAAATTTCCTGTT Region 12-56 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

Region 12-56 10 PWM

Residues
45 aa
Domains
No overlapping PFAM annotation recorded
3D models
10 active PDBs · 10 summary rows
Templates
1BC7, 1BC8, 1DUX, 1HBX, 1K6O, 2NNY, 3MFK, 3RI4, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models 10 summary rows
Region 12-5610 models · 10 summary rows
Actions
Predicted = Low DIMER_tr_A4D2L0_A4D2L0_HUMAN:12:50_3mfk_B_1 3mfk 12-50 View model · PDB
Predicted = Low DIMER_tr_A4D2L0_A4D2L0_HUMAN:12:50_3ri4_D_1 3ri4 12-50 View model · PDB
Predicted = Low DIMER_tr_A4D2L0_A4D2L0_HUMAN:12:50_5e8i_G_1 5e8i 12-50 View model · PDB
Predicted = Low DIMER_tr_A4D2L0_A4D2L0_HUMAN:12:52_2nny_B_1 2nny 12-52 View model · PDB
Predicted = Low DIMER_tr_A4D2L0_A4D2L0_HUMAN:12:55_1dux_F_1 1dux 12-55 View model · PDB
Predicted = Low TFS_tr_A4D2L0_A4D2L0_HUMAN:12:55_1dux_F_1 1dux 12-55 View model · PDB
Predicted = Low TFS_tr_A4D2L0_A4D2L0_HUMAN:12:56_1bc7_C_1 1bc7 12-56 View model · PDB
Predicted = Low TFS_tr_A4D2L0_A4D2L0_HUMAN:12:56_1bc8_C_1 1bc8 12-56 View model · PDB
Predicted = Low TFS_tr_A4D2L0_A4D2L0_HUMAN:12:56_1hbx_G_1 1hbx 12-56 View model · PDB
Predicted = Low TFS_tr_A4D2L0_A4D2L0_HUMAN:12:56_1k6o_A_1 1k6o 12-56 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1dux 12:56 12,12 55,55 P:C,F · DNA:A,B 63.6% / 72.7% 51,51 View · PDB DIMER_tr_A4D2L0_A4D2L0_HUMAN:12:55_1dux_F_1
1 1dux 12:56 12,12 55,55 P:C,F · DNA:A,B 63.6% / 72.7% 51,51 View · PDB TFS_tr_A4D2L0_A4D2L0_HUMAN:12:55_1dux_F_1
2 1k6o 12:56 12 56 P:A · DNA:D,E 53.3% / 68.9% 50 View · PDB TFS_tr_A4D2L0_A4D2L0_HUMAN:12:56_1k6o_A_1
3 1bc8 12:56 12 56 P:C · DNA:A,B 53.3% / 68.9% 48 View · PDB TFS_tr_A4D2L0_A4D2L0_HUMAN:12:56_1bc8_C_1
4 1bc7 12:56 12 56 P:C · DNA:A,B 53.3% / 68.9% 48 View · PDB TFS_tr_A4D2L0_A4D2L0_HUMAN:12:56_1bc7_C_1
5 1hbx 12:56 12 56 P:G · DNA:C,W 53.3% / 68.9% 40 View · PDB TFS_tr_A4D2L0_A4D2L0_HUMAN:12:56_1hbx_G_1
2 2nny 12:56 12,12 52,52 P:A,B · DNA:C,D 48.8% / 63.4% 31,31 View · PDB DIMER_tr_A4D2L0_A4D2L0_HUMAN:12:52_2nny_B_1
5 5e8i 12:56 12,12 50,50 P:A,G · DNA:B,C 48.7% / 69.2% 41,41 View · PIR DIMER_tr_A4D2L0_A4D2L0_HUMAN:12:50_5e8i_G_1
3 3ri4 12:56 12,12 50,50 P:A,D · DNA:B,C 48.7% / 64.1% 28,28 View · PIR DIMER_tr_A4D2L0_A4D2L0_HUMAN:12:50_3ri4_D_1
4 3mfk 12:56 12,12 50,50 P:A,B · DNA:C,D 48.7% / 64.1% 28,28 View · PDB DIMER_tr_A4D2L0_A4D2L0_HUMAN:12:50_3mfk_B_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Imported domain tags1
Ets