ModCRE DB

Transcription factor

A6NDX5 - ZNF840P

Zinc finger protein 840

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 716 aa

17 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)11
MotifPredictionSourceDNA bindingSupportLogoActions
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 55.5% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 52.9% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 52.9% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 51.8% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 51.8% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.4% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 50.4% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 50.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.0% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 50.0% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_A6NDX5_ZN840_HUMAN:331:382_1llm_C_1 ModCRE Homology model CCCGCGCGCGGG Region 331-382 · 1 3D model Open · Scan
TFS_sp_A6NDX5_ZN840_HUMAN:370:523_2i13_A_1 ModCRE Homology model AATTGTAATAAAACCCTCAAT Region 370-523 · 1 3D model Open · Scan
TFS_sp_A6NDX5_ZN840_HUMAN:417:707_7w1m_H_1 ModCRE Homology model TACAACGGTAACTTAAAAAAATATTTACCAACTTAAGTACTAC Region 417-707 · 1 3D model Open · Scan
TFS_sp_A6NDX5_ZN840_HUMAN:443:711_5wjq_D_1 ModCRE Homology model GGCGAGGGCCGGGGGGGGGGGGTATCCC Region 443-711 · 1 3D model Open · Scan
TFS_sp_A6NDX5_ZN840_HUMAN:444:711_5v3j_E_1 ModCRE Homology model GCCCTGACATATCCCCGGCCCCCTGG Region 444-711 · 1 3D model Open · Scan
TFS_sp_A6NDX5_ZN840_HUMAN:444:711_5v3m_C_1 ModCRE Homology model CCCCAGGGCCTGGGGGGGGTGGGGCC Region 444-711 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 716 aa
331-711

Region 331-711 6 PWM

Residues
381 aa
Domains
PF13912 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 331-7116 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_A6NDX5_ZN840_HUMAN:331:382_1llm_C_1 1llm 331-382 View model · PDB
Predicted = Low TFS_sp_A6NDX5_ZN840_HUMAN:370:523_2i13_A_1 2i13 370-523 View model · PDB
Predicted = Low TFS_sp_A6NDX5_ZN840_HUMAN:417:707_7w1m_H_1 7w1m 417-707 View model · PDB
Predicted = Low TFS_sp_A6NDX5_ZN840_HUMAN:443:711_5wjq_D_1 5wjq 443-711 View model · PDB
Predicted = Low TFS_sp_A6NDX5_ZN840_HUMAN:444:711_5v3j_E_1 5v3j 444-711 View model · PDB
Predicted = Low TFS_sp_A6NDX5_ZN840_HUMAN:444:711_5v3m_C_1 5v3m 444-711 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 275:711 370 523 P:A · DNA:C,D 48.1% / 66.2% 100 View · PDB TFS_sp_A6NDX5_ZN840_HUMAN:370:523_2i13_A_1
1 5wjq 275:711 443 711 P:D · DNA:A,B 45.8% / 60.3% 95 View · PDB TFS_sp_A6NDX5_ZN840_HUMAN:443:711_5wjq_D_1
2 5v3m 275:711 444 711 P:C · DNA:A,B 44.9% / 61.2% 96 View · PDB TFS_sp_A6NDX5_ZN840_HUMAN:444:711_5v3m_C_1
3 5v3j 275:711 444 711 P:E · DNA:A,B 44.9% / 61.2% 96 View · PDB TFS_sp_A6NDX5_ZN840_HUMAN:444:711_5v3j_E_1
1 1llm 275:711 331,331 382,382 P:C,D · DNA:A,B 42.3% / 65.4% 59,61 View · PDB DIMER_sp_A6NDX5_ZN840_HUMAN:331:382_1llm_C_1
5 7w1m 275:711 417 707 P:H · DNA:F,G 34.1% / 48.7% 90 View · PDB TFS_sp_A6NDX5_ZN840_HUMAN:417:707_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
42-82PF01352KRAB boxNo overlap with loaded model regions
151-173PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
207-229PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
235-257PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
305-327PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
333-355PF13912C2H2-type zinc fingeroverlaps 331-711
361-383PF00096Zinc finger, C2H2 typeoverlaps 331-711
389-411PF13912C2H2-type zinc fingeroverlaps 331-711
417-439PF00096Zinc finger, C2H2 typeoverlaps 331-711
445-467PF00096Zinc finger, C2H2 typeoverlaps 331-711
473-495PF00096Zinc finger, C2H2 typeoverlaps 331-711
501-523PF00096Zinc finger, C2H2 typeoverlaps 331-711
549-571PF00096Zinc finger, C2H2 typeoverlaps 331-711
577-599PF13912C2H2-type zinc fingeroverlaps 331-711
605-627PF00096Zinc finger, C2H2 typeoverlaps 331-711
633-655PF00096Zinc finger, C2H2 typeoverlaps 331-711
661-683PF00096Zinc finger, C2H2 typeoverlaps 331-711
689-711PF00096Zinc finger, C2H2 typeoverlaps 331-711