ModCRE DB

Transcription factor

A6NFI3 - ZNF316

Zinc finger protein 316

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 1004 aa

67 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)57
MotifPredictionSourceDNA bindingSupportLogoActions
M00943_2.00 NN 70-40% CisBP CCCGCTGC 61.9% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 60.7% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.7% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 60.7% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 59.5% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 58.3% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 58.3% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 58.3% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.6% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 56.8% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 56.6% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 55.9% identity Open · Scan
M06466_2.00 NN 70-40% CisBP TCCGCCCCCT 55.4% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 55.1% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 54.6% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 54.2% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 53.5% identity Open · Scan
M07633_2.00 NN 70-40% CisBP CTCTCGTTGTGCCTTTGCCAT 53.4% identity Open · Scan
MA1651.1 NN 70-40% JASPAR GTTCCAAAATGGCTGCCTCCG 53.4% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 52.9% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 52.7% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 52.7% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 52.6% identity Open · Scan
MA0740.1 NN 70-40% JASPAR GGCCACGCCCCCTT 52.6% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 52.3% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 52.2% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 52.2% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 52.2% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 52.1% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.7% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 51.6% identity Open · Scan
M07720_2.00 NN 70-40% CisBP TGTGTGTGTGGGCATGTGTGTGTGCGAGT 51.5% identity Open · Scan
M09008_2.00 NN 70-40% CisBP CCCGGCCCCACCCT 51.3% identity Open · Scan
MA0493.1 NN 70-40% JASPAR GGCCACACCCA 51.3% identity Open · Scan
MA0599.1 NN 70-40% JASPAR GCCCCGCCCC 51.3% identity Open · Scan
M03682_2.00 NN 70-40% CisBP ACGCCACGCCCAGT 51.2% identity Open · Scan
M05859_2.00 NN 70-40% CisBP GGCCACGCCCACT 51.2% identity Open · Scan
MA0685.1 NN 70-40% JASPAR TAAGCCACGCCCCCTTT 51.2% identity Open · Scan
MA0746.1 NN 70-40% JASPAR GCCACGCCCCC 51.2% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 51.0% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 50.7% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 50.6% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 50.5% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 50.4% identity Open · Scan
M07638_2.00 NN 70-40% CisBP TGCAGCTCCCTGCCC 50.3% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 50.2% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 50.2% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 50.0% identity Open · Scan
M01442_2.00 NN 70-40% CisBP ACCCCACATT 50.0% identity Open · Scan
M01447_2.00 NN 70-40% CisBP TACCCCTGA 50.0% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 50.0% identity Open · Scan
M06169_2.00 NN 70-40% CisBP GCCACGCCCAAC 50.0% identity Open · Scan
M07623_2.00 NN 70-40% CisBP GTCTAATAGAGCTGGGCTGCA 50.0% identity Open · Scan
M08525_2.00 NN 70-40% CisBP CCCCGCA 50.0% identity Open · Scan
MA0162.1 NN 70-40% JASPAR TGCGTGGGCGG 50.0% identity Open · Scan
MA0162.2 NN 70-40% JASPAR CCCCCGCCCCCGCC 50.0% identity Open · Scan
MA0747.1 NN 70-40% JASPAR GCCACGCCCACT 50.0% identity Open · Scan
ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_sp_A6NFI3_ZN316_HUMAN:773:822_1llm_D_1 ModCRE Homology model CCCGGCGCCGGG Region 773-822 · 1 3D model Open · Scan
TFS_sp_A6NFI3_ZN316_HUMAN:687:937_5wjq_D_1 ModCRE Homology model GGTGGGGGGGGGCCCTTGGGGGCGGGGG Region 687-937 · 1 3D model Open · Scan
TFS_sp_A6NFI3_ZN316_HUMAN:688:717_2i13_A_1 ModCRE Homology model TAGCTATAGCCCAG Region 688-717 · 1 3D model Open · Scan
TFS_sp_A6NFI3_ZN316_HUMAN:688:717_5egb_A_1 ModCRE Homology model GGGGGGGCC Region 688-717 · 1 3D model Open · Scan
TFS_sp_A6NFI3_ZN316_HUMAN:688:717_5eh2_F_1 ModCRE Homology model CACGGGGGCCCCG Region 688-717 · 1 3D model Open · Scan
TFS_sp_A6NFI3_ZN316_HUMAN:688:717_5ei9_E_1 ModCRE Homology model AAAGGGGCC Region 688-717 · 1 3D model Open · Scan
TFS_sp_A6NFI3_ZN316_HUMAN:688:937_5v3j_E_1 ModCRE Homology model GGGGGGGGGGGGGGCGGGGGGCCCAC Region 688-937 · 1 3D model Open · Scan
TFS_sp_A6NFI3_ZN316_HUMAN:688:937_5v3m_C_1 ModCRE Homology model GGGGGGGGGGGGGACGGGGGCGGTCC Region 688-937 · 1 3D model Open · Scan
TFS_sp_A6NFI3_ZN316_HUMAN:690:717_5wjq_D_1 ModCRE Homology model TCCGCGCCCCCC Region 690-717 · 1 3D model Open · Scan
TFS_sp_A6NFI3_ZN316_HUMAN:784:937_2i13_A_1 ModCRE Homology model AGACTGGGTGTCTAGCTACTT Region 784-937 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1004 aa
687-946

Region 687-946 10 PWM

Residues
260 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
11 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EGB, 5EH2, 5EI9, 5V3J, 5V3M, 5WJQ, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 687-94611 models · 6 summary rows
Actions
Predicted = Low DIMER_sp_A6NFI3_ZN316_HUMAN:773:822_1llm_D_1 1llm 773-822 View model · PDB
Predicted = Low TFS_sp_A6NFI3_ZN316_HUMAN:687:937_5wjq_D_1 5wjq 687-937 View model · PDB
Predicted = Low TFS_sp_A6NFI3_ZN316_HUMAN:687:946_7w1m_H_1 7w1m 687-946 View model · PDB
Predicted = Low TFS_sp_A6NFI3_ZN316_HUMAN:688:717_2i13_A_1 2i13 688-717 View model · PDB
Predicted = Low TFS_sp_A6NFI3_ZN316_HUMAN:688:717_5egb_A_1 5egb 688-717 View model · PDB
Predicted = Low TFS_sp_A6NFI3_ZN316_HUMAN:688:717_5eh2_F_1 5eh2 688-717 View model · PDB
Predicted = Low TFS_sp_A6NFI3_ZN316_HUMAN:688:717_5ei9_E_1 5ei9 688-717 View model · PDB
Predicted = Low TFS_sp_A6NFI3_ZN316_HUMAN:688:937_5v3j_E_1 5v3j 688-937 View model · PDB
Predicted = Low TFS_sp_A6NFI3_ZN316_HUMAN:688:937_5v3m_C_1 5v3m 688-937 View model · PDB
Predicted = Low TFS_sp_A6NFI3_ZN316_HUMAN:690:717_5wjq_D_1 5wjq 690-717 View model · PDB
Predicted = Low TFS_sp_A6NFI3_ZN316_HUMAN:784:937_2i13_A_1 2i13 784-937 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1llm 687:946 773,773 822,822 P:C,D · DNA:A,B 54.0% / 66.0% 57,58 View · PDB DIMER_sp_A6NFI3_ZN316_HUMAN:773:822_1llm_D_1
4 2i13 687:946 784 937 P:A · DNA:C,D 52.6% / 67.5% 100 View · PDB TFS_sp_A6NFI3_ZN316_HUMAN:784:937_2i13_A_1
1 5wjq 687:946 687 937 P:D · DNA:A,B 46.2% / 63.3% 89 View · PDB TFS_sp_A6NFI3_ZN316_HUMAN:687:937_5wjq_D_1
2 5v3m 687:946 688 937 P:C · DNA:A,B 44.4% / 61.6% 90 View · PDB TFS_sp_A6NFI3_ZN316_HUMAN:688:937_5v3m_C_1
3 5v3j 687:946 688 937 P:E · DNA:A,B 44.4% / 61.6% 90 View · PDB TFS_sp_A6NFI3_ZN316_HUMAN:688:937_5v3j_E_1
5 7w1m 687:946 687 946 P:H · DNA:F,G 37.0% / 48.3% 80 View · PDB TFS_sp_A6NFI3_ZN316_HUMAN:687:946_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
157-198PF01352KRAB boxNo overlap with loaded model regions
346-367PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
375-395PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
401-423PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
429-451PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
457-479PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
692-713PF00096Zinc finger, C2H2 typeoverlaps 687-946
719-741PF00096Zinc finger, C2H2 typeoverlaps 687-946
747-769PF00096Zinc finger, C2H2 typeoverlaps 687-946
775-797PF00096Zinc finger, C2H2 typeoverlaps 687-946
803-822PF00096Zinc finger, C2H2 typeoverlaps 687-946
831-853PF00096Zinc finger, C2H2 typeoverlaps 687-946
859-881PF00096Zinc finger, C2H2 typeoverlaps 687-946
887-909PF00096Zinc finger, C2H2 typeoverlaps 687-946
915-937PF00096Zinc finger, C2H2 typeoverlaps 687-946