Region 118-175 0 PWM
- Residues
- 58 aa
- Domains
- PF00010 · Helix-loop-helix DNA-binding domain
- 3D models
- 1 active PDB
- Templates
- 1HLO
- Sources
- Structure model
Transcription factor
A6NI15 - MSGN1
Mesogenin-1 (Paraxial mesoderm-specific mesogenin1) (pMesogenin1) (pMsgn1)
Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 193 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known3
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| MA1524.1 | Known | JASPAR | CGCCATATGTCC | Direct PWM | Open · Scan | |
| M04144_2.00 | Known | CisBP | GGACATATGGCG | Direct PWM | Open · Scan | |
| M04145_2.00 | Known | CisBP | TAACATATGGTG | Direct PWM | Open · Scan |
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE0
No generated PWM in this category.
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
193 aa
118-175
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 118-1751 model
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_A6NI15:118:175_1hlo_A_1 | 1hlo | 118-175 | View model · PDB |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 125-178 | PF00010 | Helix-loop-helix DNA-binding domain | overlaps 118-175 |