Transcription factor

A6NK53 - ZNF233

Zinc finger protein 233

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 670 aa

79 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)69

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
M00953_2.00	NN 70-40%	CisBP	ATCTATAT	67.0% identity		Open · Scan
M00960_2.00	NN 70-40%	CisBP	TGCATCCC	67.0% identity		Open · Scan
M00950_2.00	NN 70-40%	CisBP	GCAGCCCA	65.8% identity		Open · Scan
M00952_2.00	NN 70-40%	CisBP	GGATGCTC	65.8% identity		Open · Scan
M00955_2.00	NN 70-40%	CisBP	ACGTCCTCT	65.8% identity		Open · Scan
MA1124.1	NN 70-40%	JASPAR	CATTCATTCATTC	65.1% identity		Open · Scan
M00943_2.00	NN 70-40%	CisBP	CCCGCTGC	64.7% identity		Open · Scan
M00944_2.00	NN 70-40%	CisBP	TCGCTATAA	64.7% identity		Open · Scan
M00948_2.00	NN 70-40%	CisBP	GCAGCACC	64.7% identity		Open · Scan
M00959_2.00	NN 70-40%	CisBP	GCCCTCCC	64.7% identity		Open · Scan
M00958_2.00	NN 70-40%	CisBP	CGGCATCCC	63.5% identity		Open · Scan
M00939_2.00	NN 70-40%	CisBP	CCACCTCA	62.3% identity		Open · Scan
M02924_2.00	NN 70-40%	CisBP	AGTGTTAACAGAACACCT	61.0% identity		Open · Scan
M07635_2.00	NN 70-40%	CisBP	AAGTTTTCTTGTATTATATCT	58.9% identity		Open · Scan
M07633_2.00	NN 70-40%	CisBP	CTCTCGTTGTGCCTTTGCCAT	58.6% identity		Open · Scan
M08357_2.00	NN 70-40%	CisBP	GAGCCTGCTACTGAGCCTGGG	57.3% identity		Open · Scan
MA1589.1	NN 70-40%	JASPAR	TAGGAGTGGAATTGCTGGGTC	57.2% identity		Open · Scan
M07613_2.00	NN 70-40%	CisBP	TCACTCAGTCATTCA	56.8% identity		Open · Scan
M04387_2.00	NN 70-40%	CisBP	CGTGCTCCCC	56.7% identity		Open · Scan
M07578_2.00	NN 70-40%	CisBP	CAACTCTCC	56.7% identity		Open · Scan
M00945_2.00	NN 70-40%	CisBP	CACCGCAC	56.3% identity		Open · Scan
M07649_2.00	NN 70-40%	CisBP	CCCCCCCCCCCCTCAGGAATGCC	55.7% identity		Open · Scan
M04475_2.00	NN 70-40%	CisBP	GATGCACGTACCGTGCCTCA	55.1% identity		Open · Scan
M04613_2.00	NN 70-40%	CisBP	CTCATGTGCTAATTACAAA	55.1% identity		Open · Scan
M08325_2.00	NN 70-40%	CisBP	TTTTTTTTT	55.0% identity		Open · Scan
M08392_2.00	NN 70-40%	CisBP	CTTCACCTGCTGAGG	55.0% identity		Open · Scan
M08917_2.00	NN 70-40%	CisBP	GCTGAGCCATGTGGGGTGCT	54.8% identity		Open · Scan
M08274_2.00	NN 70-40%	CisBP	TTACTTGCAGCCCAACGCATTCCTAAC	54.6% identity		Open · Scan
M07683_2.00	NN 70-40%	CisBP	GTGGGAAAGCCT	54.1% identity		Open · Scan
MA1601.1	NN 70-40%	JASPAR	ATGTGGGAAA	54.1% identity		Open · Scan
M07702_2.00	NN 70-40%	CisBP	CTTCTTCCTTGG	53.8% identity		Open · Scan
M04505_2.00	NN 70-40%	CisBP	AGCTTTTCCCACAC	53.7% identity		Open · Scan
M07562_2.00	NN 70-40%	CisBP	GAAAAAAAC	53.6% identity		Open · Scan
M07605_2.00	NN 70-40%	CisBP	TATTTTTTTTTATTTTTTTTTTTTTTTTTT	53.6% identity		Open · Scan
M07699_2.00	NN 70-40%	CisBP	GGTTTAT	53.4% identity		Open · Scan
M07620_2.00	NN 70-40%	CisBP	TTGGATCTGTGGATTCATGTCTTTCAT	53.2% identity		Open · Scan
M07685_2.00	NN 70-40%	CisBP	CTTTCCAGCCAC	53.2% identity		Open · Scan
M07754_2.00	NN 70-40%	CisBP	CGCCCCCTCCCT	53.1% identity		Open · Scan
MA1602.1	NN 70-40%	JASPAR	CGTCTACACGGG	52.9% identity		Open · Scan
M08283_2.00	NN 70-40%	CisBP	GACTTTTATTTT	52.3% identity		Open · Scan
M01456_2.00	NN 70-40%	CisBP	GTGATCGGCG	52.1% identity		Open · Scan
M04465_2.00	NN 70-40%	CisBP	GTGATTCTTATCTTATCCTT	52.1% identity		Open · Scan
M06179_2.00	NN 70-40%	CisBP	TAAGCCTATAGA	51.8% identity		Open · Scan
M02913_2.00	NN 70-40%	CisBP	TTCGTGGCATTTTTCTA	51.7% identity		Open · Scan
M07601_2.00	NN 70-40%	CisBP	CAGATGCCGGCACCATGCTTC	51.7% identity		Open · Scan
MA1656.1	NN 70-40%	JASPAR	CCAAGCCCAACCAG	51.7% identity		Open · Scan
M00645_2.00	NN 70-40%	CisBP	CGCCCACGCA	51.6% identity		Open · Scan
MA0130.1	NN 70-40%	JASPAR	ATCCAC	51.6% identity		Open · Scan
M08373_2.00	NN 70-40%	CisBP	CCCCCTGGCTCTTCCTCT	51.5% identity		Open · Scan
M00779_2.00	NN 70-40%	CisBP	GCCACGCCCA	51.3% identity		Open · Scan
M07686_2.00	NN 70-40%	CisBP	TAGCTTGTTTCCAGCCAC	51.3% identity		Open · Scan
M08867_2.00	NN 70-40%	CisBP	CACCCCCTG	51.3% identity		Open · Scan
M07688_2.00	NN 70-40%	CisBP	GAGCCCCAAGCA	51.2% identity		Open · Scan
M08540_2.00	NN 70-40%	CisBP	CCCCT	51.1% identity		Open · Scan
M04536_2.00	NN 70-40%	CisBP	ACGTAACCCGATACC	50.7% identity		Open · Scan
M07715_2.00	NN 70-40%	CisBP	CCGCCGCCGCCGTGG	50.7% identity		Open · Scan
M03710_2.00	NN 70-40%	CisBP	CTCACGCCCCCC	50.6% identity		Open · Scan
M04430_2.00	NN 70-40%	CisBP	GACCACGCCCA	50.6% identity		Open · Scan
M08334_2.00	NN 70-40%	CisBP	TTTGTTTTTTTCTGATTGCTTTTTACTTAT	50.6% identity		Open · Scan
MA0599.1	NN 70-40%	JASPAR	GCCCCGCCCC	50.6% identity		Open · Scan
MA0742.1	NN 70-40%	JASPAR	GACCACGCCCTTATT	50.6% identity		Open · Scan
M08944_2.00	NN 70-40%	CisBP	TACCATGCTGTTTTGATTAC	50.4% identity		Open · Scan
M01044_2.00	NN 70-40%	CisBP	TCTCTCTTTC	50.3% identity		Open · Scan
MA1599.1	NN 70-40%	JASPAR	CGGGCCAAGCCCCTAT	50.3% identity		Open · Scan
M07600_2.00	NN 70-40%	CisBP	GCATTAGC	50.2% identity		Open · Scan
M03671_2.00	NN 70-40%	CisBP	ATTACCATACAAGTGCAC	50.0% identity		Open · Scan
MA0740.1	NN 70-40%	JASPAR	GGCCACGCCCCCTT	50.0% identity		Open · Scan
MA1517.1	NN 70-40%	JASPAR	GGCCACGCCCA	50.0% identity		Open · Scan
MA1600.1	NN 70-40%	JASPAR	ATACAGTCCACCCCTTTA	50.0% identity		Open · Scan

ModCRE10

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
TFS_sp_A6NK53_ZN233_HUMAN:268:420_2i13_A_1	ModCRE	Homology model	AAGTACCTGCTATTCCGCTAC	Region 268-420 · 1 3D model		Open · Scan
TFS_sp_A6NK53_ZN233_HUMAN:342:421_2kmk_A_1	ModCRE	Homology model	TTTTTTGGTCAGTAGA	Region 342-421 · 1 3D model		Open · Scan
TFS_sp_A6NK53_ZN233_HUMAN:372:420_4is1_C_1	ModCRE	Homology model	ACAATCTCGGG	Region 372-420 · 1 3D model		Open · Scan
TFS_sp_A6NK53_ZN233_HUMAN:372:422_3uk3_D_1	ModCRE	Homology model	GATGTGAGTC	Region 372-422 · 1 3D model		Open · Scan
TFS_sp_A6NK53_ZN233_HUMAN:372:422_4is1_D_1	ModCRE	Homology model	CGACAGATTG	Region 372-422 · 1 3D model		Open · Scan
TFS_sp_A6NK53_ZN233_HUMAN:395:661_5wjq_D_1	ModCRE	Homology model	ACGATGCCCCCAACACCACGCGGACCCC	Region 395-661 · 1 3D model		Open · Scan
TFS_sp_A6NK53_ZN233_HUMAN:399:661_5v3j_E_1	ModCRE	Homology model	TCCCAGGGGCCGGCCCGGCCCTCC	Region 399-661 · 1 3D model		Open · Scan
TFS_sp_A6NK53_ZN233_HUMAN:399:661_5v3m_C_1	ModCRE	Homology model	CGGCCCCCGCCGCCCCGTCGCCCCC	Region 399-661 · 1 3D model		Open · Scan
TFS_sp_A6NK53_ZN233_HUMAN:489:642_2i13_A_1	ModCRE	Homology model	AATTAAAGAGAAAAAGAGTAG	Region 489-642 · 1 3D model		Open · Scan
TFS_sp_A6NK53_ZN233_HUMAN:533:643_5ei9_E_1	ModCRE	Homology model	GGCCCCCACCCCTACGA	Region 533-643 · 1 3D model		Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 670 aa

268-661

Region 268-661 10 PWM

Residues

394 aa

Domains

PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type

3D models

11 active PDBs · 6 summary rows

Templates

1LLM, 2I13, 2KMK, 3UK3, 4IS1, 5EI9, 5V3J, 5V3M, ...

Sources

Predicted = Low

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

11 active PDB models 6 summary rows

Region 268-66111 models · 6 summary rows

Source ↕	Model ↕	Template ↕	Residues modeled ↕	Actions
Predicted = Low	DIMER_sp_A6NK53_ZN233_HUMAN:478:529_1llm_C_1	1llm	478-529	View model · PDB
Predicted = Low	TFS_sp_A6NK53_ZN233_HUMAN:268:420_2i13_A_1	2i13	268-420	View model · PDB
Predicted = Low	TFS_sp_A6NK53_ZN233_HUMAN:342:421_2kmk_A_1	2kmk	342-421	View model · PDB
Predicted = Low	TFS_sp_A6NK53_ZN233_HUMAN:372:420_4is1_C_1	4is1	372-420	View model · PDB
Predicted = Low	TFS_sp_A6NK53_ZN233_HUMAN:372:422_3uk3_D_1	3uk3	372-422	View model · PDB
Predicted = Low	TFS_sp_A6NK53_ZN233_HUMAN:372:422_4is1_D_1	4is1	372-422	View model · PDB
Predicted = Low	TFS_sp_A6NK53_ZN233_HUMAN:395:661_5wjq_D_1	5wjq	395-661	View model · PDB
Predicted = Low	TFS_sp_A6NK53_ZN233_HUMAN:399:661_5v3j_E_1	5v3j	399-661	View model · PDB
Predicted = Low	TFS_sp_A6NK53_ZN233_HUMAN:399:661_5v3m_C_1	5v3m	399-661	View model · PDB
Predicted = Low	TFS_sp_A6NK53_ZN233_HUMAN:489:642_2i13_A_1	2i13	489-642	View model · PDB
Predicted = Low	TFS_sp_A6NK53_ZN233_HUMAN:533:643_5ei9_E_1	5ei9	533-643	View model · PDB

Model-summary evidence imported for this region.

Rank	Template	Domain	N-tails	C-tails	Chains	Identity / similarity	Coverage	Model file
4	2i13	395:662	489	642	P:A · DNA:C,D	62.3% / 67.5%	100	View · PDB TFS_sp_A6NK53_ZN233_HUMAN:489:642_2i13_A_1
5	5ei9	395:662	533	643	P:E · DNA:A,B	62.2% / 66.7%	100	View · PDB TFS_sp_A6NK53_ZN233_HUMAN:533:643_5ei9_E_1
2	5v3m	395:662	399	661	P:C · DNA:A,B	49.8% / 62.6%	94	View · PDB TFS_sp_A6NK53_ZN233_HUMAN:399:661_5v3m_C_1
3	5v3j	395:662	399	661	P:E · DNA:A,B	49.8% / 62.6%	94	View · PDB TFS_sp_A6NK53_ZN233_HUMAN:399:661_5v3j_E_1
1	5wjq	395:662	395	661	P:D · DNA:A,B	49.4% / 63.6%	95	View · PDB TFS_sp_A6NK53_ZN233_HUMAN:395:661_5wjq_D_1
1	1llm	395:662	478,478	529,529	P:C,D · DNA:A,B	46.2% / 69.2%	59,61	View · PDB DIMER_sp_A6NK53_ZN233_HUMAN:478:529_1llm_C_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
7-48	PF01352	KRAB box	No overlap with loaded model regions
452-474	PF00096	Zinc finger, C2H2 type	overlaps 268-661
480-502	PF00096	Zinc finger, C2H2 type	overlaps 268-661
508-530	PF00096	Zinc finger, C2H2 type	overlaps 268-661
536-558	PF00096	Zinc finger, C2H2 type	overlaps 268-661
564-586	PF00096	Zinc finger, C2H2 type	overlaps 268-661
620-642	PF00096	Zinc finger, C2H2 type	overlaps 268-661