ModCRE DB

Transcription factor

A6NMT0 - DBX1

Homeobox protein DBX1 (Developing brain homeobox protein 1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 343 aa

39 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M00451_2.00 NN 70+% CisBP ATTAATTA 87.7% identity Open · Scan
M02128_2.00 NN 70+% CisBP ATTAATTA 72.5% identity Open · Scan
M06489_2.00 NN 70+% CisBP TTAATTA 70.3% identity Open · Scan
Nearest Neighbor (70% - 40%)36
MotifPredictionSourceDNA bindingSupportLogoActions
M06232_2.00 NN 70-40% CisBP TTAATGA 60.7% identity Open · Scan
M02153_2.00 NN 70-40% CisBP GCCCAATAAA 58.4% identity Open · Scan
M06361_2.00 NN 70-40% CisBP TTTAATTA 58.4% identity Open · Scan
MA0124.1 NN 70-40% JASPAR ATACTTA 56.8% identity Open · Scan
M03810_2.00 NN 70-40% CisBP GCTAAACGGT 56.6% identity Open · Scan
M02179_2.00 NN 70-40% CisBP GCTAATTAC 54.9% identity Open · Scan
M02106_2.00 NN 70-40% CisBP ATATTAATTGGTT 54.7% identity Open · Scan
M05019_2.00 NN 70-40% CisBP GGTCGTAAAAC 54.7% identity Open · Scan
MA0878.1 NN 70-40% JASPAR GCAATAAAA 54.7% identity Open · Scan
M06359_2.00 NN 70-40% CisBP TTTAATTA 54.0% identity Open · Scan
M02211_2.00 NN 70-40% CisBP TTAATTAC 53.3% identity Open · Scan
M06241_2.00 NN 70-40% CisBP CGTTAATTATTT 52.9% identity Open · Scan
M06504_2.00 NN 70-40% CisBP TTAAGTG 52.9% identity Open · Scan
M09565_2.00 NN 70-40% CisBP GTTAATGGCC 52.9% identity Open · Scan
M05392_2.00 NN 70-40% CisBP GTTAAGTGC 52.8% identity Open · Scan
M02210_2.00 NN 70-40% CisBP AAGTACTTAA 52.5% identity Open · Scan
MA0877.1 NN 70-40% JASPAR GCTAATTGCT 52.4% identity Open · Scan
MA0877.2 NN 70-40% JASPAR CTAAACGG 52.4% identity Open · Scan
M00520_2.00 NN 70-40% CisBP CTTAAGTGCT 51.9% identity Open · Scan
MA0673.1 NN 70-40% JASPAR CCACTTGAA 51.9% identity Open · Scan
M00385_2.00 NN 70-40% CisBP TTAAGTGG 51.7% identity Open · Scan
M00388_2.00 NN 70-40% CisBP CTAATTGCTT 51.7% identity Open · Scan
M09146_2.00 NN 70-40% CisBP CTTGAGTGGC 51.7% identity Open · Scan
MA0707.1 NN 70-40% JASPAR GGTAATTAAA 51.7% identity Open · Scan
M09193_2.00 NN 70-40% CisBP TTTTATGGCCTT 50.8% identity Open · Scan
MA0675.1 NN 70-40% JASPAR CTAATTAA 50.7% identity Open · Scan
MA1530.1 NN 70-40% JASPAR CTCATTAAA 50.7% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 50.0% identity Open · Scan
M01503_2.00 NN 70-40% CisBP TTAATTAC 50.0% identity Open · Scan
M09195_2.00 NN 70-40% CisBP TAATTATAGGT 50.0% identity Open · Scan
MA0880.1 NN 70-40% JASPAR CCAATTAC 50.0% identity Open · Scan
MA0885.1 NN 70-40% JASPAR GCAATTAA 50.0% identity Open · Scan
MA0889.1 NN 70-40% JASPAR ACTAATTAGC 50.0% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 50.0% identity Open · Scan
MA1473.1 NN 70-40% JASPAR GGCAATAAAAC 50.0% identity Open · Scan
MA1476.1 NN 70-40% JASPAR GCAATTAC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 343 aa
184-235

Region 184-235 0 PWM

Residues
52 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5ZJS
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 184-2351 model
Actions
Predicted = Low DIMER_A6NMT0:184:235_5zjs_A_1 5zjs 184-235 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
184-238PF00046Homeodomainoverlaps 184-235