ModCRE DB

Transcription factor

A8K1G6

cDNA FLJ76000, highly similar to Homo sapiens zinc finger protein 311 (ZNF311), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 574 aa

86 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)81
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 62.3% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 62.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 61.1% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 61.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 60.7% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 60.4% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 60.2% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 60.0% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 59.6% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 59.5% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 59.5% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 59.5% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 58.8% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 58.4% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 58.2% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 58.0% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 58.0% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 57.7% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 57.3% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 57.2% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 57.1% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 57.1% identity Open · Scan
MA1599.1 NN 70-40% JASPAR CGGGCCAAGCCCCTAT 56.2% identity Open · Scan
M06108_2.00 NN 70-40% CisBP ACAACAACAAC 55.6% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 55.6% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 55.6% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 55.3% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 55.3% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 55.2% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 55.2% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 54.7% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 54.5% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 54.4% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 54.3% identity Open · Scan
M07685_2.00 NN 70-40% CisBP CTTTCCAGCCAC 54.2% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 54.1% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 54.0% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 53.9% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 53.8% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 53.7% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 53.5% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 53.3% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 53.2% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 53.1% identity Open · Scan
M08295_2.00 NN 70-40% CisBP CTGCTGGAATCTCCA 53.1% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 52.9% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 52.8% identity Open · Scan
M04515_2.00 NN 70-40% CisBP TATGCTATAACAAGCAGCCCC 52.7% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 52.7% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 52.7% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 52.4% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 52.4% identity Open · Scan
M01883_2.00 NN 70-40% CisBP TGCCCCTGA 52.3% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 52.2% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 52.2% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 51.8% identity Open · Scan
M02896_2.00 NN 70-40% CisBP TGCTTTCTAGGAATTCA 51.7% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 51.7% identity Open · Scan
MA0731.1 NN 70-40% JASPAR TGCTTTCTAGGAATTCA 51.7% identity Open · Scan
M00774_2.00 NN 70-40% CisBP TTAGTATACACAAGT 51.3% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 51.3% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 51.3% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 51.2% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 51.0% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.0% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.9% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.9% identity Open · Scan
M06039_2.00 NN 70-40% CisBP TATCTGAAA 50.9% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 50.9% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 50.9% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 50.9% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 50.8% identity Open · Scan
M07634_2.00 NN 70-40% CisBP AAACGTCCACG 50.7% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 50.7% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 50.5% identity Open · Scan
M07767_2.00 NN 70-40% CisBP AAAAACCCCAGA 50.3% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 50.1% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 50.0% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 50.0% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 50.0% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_A8K1G6_A8K1G6_HUMAN:293:344_1llm_D_1 ModCRE Homology model TTTGGGACCAAA Region 293-344 · 1 3D model Open · Scan
TFS_tr_A8K1G6_A8K1G6_HUMAN:180:458_5wjq_D_1 ModCRE Homology model CCGGACCGCCCCGCCCCCCCCCCGCCCG Region 180-458 · 1 3D model Open · Scan
TFS_tr_A8K1G6_A8K1G6_HUMAN:238:514_5v3j_E_1 ModCRE Homology model CCCCCCGAGCGCCCCCCCCCCGGGAA Region 238-514 · 1 3D model Open · Scan
TFS_tr_A8K1G6_A8K1G6_HUMAN:238:514_5v3m_C_1 ModCRE Homology model GGGCACACCCAACCCTTTCGCAAAAA Region 238-514 · 1 3D model Open · Scan
TFS_tr_A8K1G6_A8K1G6_HUMAN:332:485_2i13_A_1 ModCRE Homology model ATGACGCTGTAGCCTGCGAAG Region 332-485 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 574 aa
180-514

Region 180-514 5 PWM

Residues
335 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13912 · C2H2-type zinc finger
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 180-5146 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_A8K1G6_A8K1G6_HUMAN:293:344_1llm_D_1 1llm 293-344 View model · PDB
Predicted = Low TFS_tr_A8K1G6_A8K1G6_HUMAN:180:458_5wjq_D_1 5wjq 180-458 View model · PDB
Predicted = Low TFS_tr_A8K1G6_A8K1G6_HUMAN:211:509_7w1m_H_1 7w1m 211-509 View model · PDB
Predicted = Low TFS_tr_A8K1G6_A8K1G6_HUMAN:238:514_5v3j_E_1 5v3j 238-514 View model · PDB
Predicted = Low TFS_tr_A8K1G6_A8K1G6_HUMAN:238:514_5v3m_C_1 5v3m 238-514 View model · PDB
Predicted = Low TFS_tr_A8K1G6_A8K1G6_HUMAN:332:485_2i13_A_1 2i13 332-485 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 155:542 332 485 P:A · DNA:C,D 56.5% / 68.2% 100 View · PDB TFS_tr_A8K1G6_A8K1G6_HUMAN:332:485_2i13_A_1
1 5wjq 155:542 180 458 P:D · DNA:A,B 50.5% / 69.9% 99 View · PDB TFS_tr_A8K1G6_A8K1G6_HUMAN:180:458_5wjq_D_1
1 1llm 155:542 293,293 344,344 P:C,D · DNA:A,B 50.0% / 67.3% 59,61 View · PDB DIMER_tr_A8K1G6_A8K1G6_HUMAN:293:344_1llm_D_1
2 5v3m 155:542 238 514 P:C · DNA:A,B 49.5% / 67.9% 100 View · PDB TFS_tr_A8K1G6_A8K1G6_HUMAN:238:514_5v3m_C_1
3 5v3j 155:542 238 514 P:E · DNA:A,B 49.5% / 67.9% 100 View · PDB TFS_tr_A8K1G6_A8K1G6_HUMAN:238:514_5v3j_E_1
5 7w1m 155:542 211 509 P:H · DNA:F,G 36.0% / 49.7% 92 View · PDB TFS_tr_A8K1G6_A8K1G6_HUMAN:211:509_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
183-205PF00096Zinc finger, C2H2 typeoverlaps 180-514
211-233PF00096Zinc finger, C2H2 typeoverlaps 180-514
239-261PF00096Zinc finger, C2H2 typeoverlaps 180-514
295-317PF00096Zinc finger, C2H2 typeoverlaps 180-514
323-345PF00096Zinc finger, C2H2 typeoverlaps 180-514
353-373PF00096Zinc finger, C2H2 typeoverlaps 180-514
407-429PF00096Zinc finger, C2H2 typeoverlaps 180-514
435-457PF00096Zinc finger, C2H2 typeoverlaps 180-514
491-513PF13912C2H2-type zinc fingeroverlaps 180-514
519-542PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions