ModCRE DB

Transcription factor

A8K360

cDNA FLJ77279, highly similar to Homo sapiens zinc finger protein 430 (ZNF430), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 570 aa

86 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
M07575_2.00 NN 70+% CisBP TCTCCAAGGCGGCCAGCA 89.4% identity Open · Scan
M00955_2.00 NN 70+% CisBP ACGTCCTCT 78.8% identity Open · Scan
M07715_2.00 NN 70+% CisBP CCGCCGCCGCCGTGG 78.2% identity Open · Scan
M08921_2.00 NN 70+% CisBP CCTCATTCTTCTTGGACATG 72.2% identity Open · Scan
Nearest Neighbor (70% - 40%)82
MotifPredictionSourceDNA bindingSupportLogoActions
M08295_2.00 NN 70-40% CisBP CTGCTGGAATCTCCA 69.7% identity Open · Scan
M07687_2.00 NN 70-40% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 69.3% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 69.3% identity Open · Scan
M07775_2.00 NN 70-40% CisBP GCCGAAACCCGGG 68.0% identity Open · Scan
M07565_2.00 NN 70-40% CisBP CCTCTGGGGGCTCGTCCA 67.2% identity Open · Scan
M08381_2.00 NN 70-40% CisBP ACATTTTGTCCTCCTAGTCCT 67.0% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 66.9% identity Open · Scan
MA1599.1 NN 70-40% JASPAR CGGGCCAAGCCCCTAT 65.6% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 65.4% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 64.7% identity Open · Scan
M07586_2.00 NN 70-40% CisBP GGGACCCGGGTGGGGGCGTCCCCC 63.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 63.3% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 62.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 61.1% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 61.1% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 60.5% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 60.1% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 60.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 60.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 59.5% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 59.3% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 58.8% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 58.8% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 58.6% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 57.6% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 57.6% identity Open · Scan
M07767_2.00 NN 70-40% CisBP AAAAACCCCAGA 57.1% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 56.8% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 56.5% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 56.3% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 56.0% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 55.9% identity Open · Scan
M00224_2.00 NN 70-40% CisBP CCCGCCCC 55.5% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.5% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 55.2% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 55.2% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 55.1% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 55.0% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 54.8% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 54.6% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 54.6% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 54.6% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.3% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 53.7% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 53.5% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 53.5% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 53.3% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 53.3% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 53.2% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 53.2% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 52.9% identity Open · Scan
M03686_2.00 NN 70-40% CisBP TGATTGCTCTTTT 52.7% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 52.7% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 52.5% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 52.3% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 52.3% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 52.2% identity Open · Scan
M02896_2.00 NN 70-40% CisBP TGCTTTCTAGGAATTCA 52.2% identity Open · Scan
MA0731.1 NN 70-40% JASPAR TGCTTTCTAGGAATTCA 52.2% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 52.1% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 51.9% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 51.9% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 51.8% identity Open · Scan
M09008_2.00 NN 70-40% CisBP CCCGGCCCCACCCT 51.3% identity Open · Scan
MA0493.1 NN 70-40% JASPAR GGCCACACCCA 51.3% identity Open · Scan
M06072_2.00 NN 70-40% CisBP CCACGCCCACGCAC 51.1% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 51.0% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 50.6% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 50.5% identity Open · Scan
M09515_2.00 NN 70-40% CisBP CCCGCCCACGCA 50.5% identity Open · Scan
MA0472.1 NN 70-40% JASPAR CCCCCGCCCACGCAC 50.5% identity Open · Scan
MA0472.2 NN 70-40% JASPAR ACGCCCACGCA 50.5% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 50.4% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 50.3% identity Open · Scan
M07659_2.00 NN 70-40% CisBP GTCTTCCAAGTAGCTGGTGTT 50.2% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 50.2% identity Open · Scan
M04463_2.00 NN 70-40% CisBP CACCACGCCCA 50.0% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 50.0% identity Open · Scan
MA0039.1 NN 70-40% JASPAR TAAAGGAAGG 50.0% identity Open · Scan
MA0039.3 NN 70-40% JASPAR CCACACCCTGC 50.0% identity Open · Scan
MA0732.1 NN 70-40% JASPAR CTACGCCCACGCACT 50.0% identity Open · Scan
MA1515.1 NN 70-40% JASPAR CACCACGCCCA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 570 aa
219-367

Region 219-367 0 PWM

Residues
149 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
2I13
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 219-3671 model
Actions
Predicted = Low TFS_A8K360:219:367_2i13_A_1 2i13 219-367 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
34-74PF01352KRAB boxNo overlap with loaded model regions
233-255PF00096Zinc finger, C2H2 typeoverlaps 219-367
261-283PF00096Zinc finger, C2H2 typeoverlaps 219-367
289-311PF00096Zinc finger, C2H2 typeoverlaps 219-367
317-339PF00096Zinc finger, C2H2 typeoverlaps 219-367
345-367PF00096Zinc finger, C2H2 typeoverlaps 219-367
373-395PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
401-423PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
429-451PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
457-479PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
485-507PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
517-535PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions