ModCRE DB

Transcription factor

A8K3J6

cDNA FLJ76260, highly similar to Homo sapiens T-box 5 (TBX5), transcript variant 1, mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 518 aa

34 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
MA0807.1 NN 70+% JASPAR AGGTGTGA 99.8% identity Open · Scan
M00833_2.00 NN 70+% CisBP AGGTGTGA 95.9% identity Open · Scan
Nearest Neighbor (70% - 40%)32
MotifPredictionSourceDNA bindingSupportLogoActions
M02498_2.00 NN 70-40% CisBP AGGTGTCA 69.5% identity Open · Scan
M08044_2.00 NN 70-40% CisBP GCATTCTGGGAATTGTAGTTT 65.5% identity Open · Scan
MA0688.1 NN 70-40% JASPAR AAGGTGTGAAA 65.5% identity Open · Scan
M01030_2.00 NN 70-40% CisBP TTGACACCTC 64.7% identity Open · Scan
M02495_2.00 NN 70-40% CisBP TTGACACCTC 63.9% identity Open · Scan
M02496_2.00 NN 70-40% CisBP AAGGTGTCAA 63.3% identity Open · Scan
M01029_2.00 NN 70-40% CisBP AGGTGTGA 62.2% identity Open · Scan
M05822_2.00 NN 70-40% CisBP GGAGGTGTGAAT 59.0% identity Open · Scan
M09650_2.00 NN 70-40% CisBP CCTGTCAACACC 59.0% identity Open · Scan
MA0689.1 NN 70-40% JASPAR TAGGTGTGAAG 59.0% identity Open · Scan
MA0805.1 NN 70-40% JASPAR AGGTGTGA 59.0% identity Open · Scan
M09429_2.00 NN 70-40% CisBP AAGGTGCTA 57.6% identity Open · Scan
MA1566.1 NN 70-40% JASPAR GAGGTGTGAA 57.6% identity Open · Scan
M03988_2.00 NN 70-40% CisBP AGGTGTGAA 56.9% identity Open · Scan
MA1567.1 NN 70-40% JASPAR GAGGTGTGAA 56.2% identity Open · Scan
MA0690.1 NN 70-40% JASPAR AAGGTGTGAA 55.7% identity Open · Scan
M03559_2.00 NN 70-40% CisBP AGGTGTGAAATTTCACACCT 55.6% identity Open · Scan
MA0806.1 NN 70-40% JASPAR AGGTGTGA 55.6% identity Open · Scan
M03993_2.00 NN 70-40% CisBP GAGGTGTGAA 55.3% identity Open · Scan
M03554_2.00 NN 70-40% CisBP AGGTGTGAAATTCACACCT 55.1% identity Open · Scan
M05798_2.00 NN 70-40% CisBP AAAGGTGTGAAA 55.1% identity Open · Scan
MA0803.1 NN 70-40% JASPAR AGGTGTGA 55.1% identity Open · Scan
MA0801.1 NN 70-40% JASPAR AGGTGTGA 54.9% identity Open · Scan
M09427_2.00 NN 70-40% CisBP TTAGCAGGGAGGTGTGAAAT 53.5% identity Open · Scan
MA0009.1 NN 70-40% JASPAR CTAGGTGTGAA 53.5% identity Open · Scan
MA0009.2 NN 70-40% JASPAR TCACACCTAGGTGTGA 53.5% identity Open · Scan
M00734_2.00 NN 70-40% CisBP GAGGTGTGAA 53.1% identity Open · Scan
MA0800.1 NN 70-40% JASPAR AAGGTGTGAAAAT 53.1% identity Open · Scan
MA0802.1 NN 70-40% JASPAR AGGTGTGAAA 51.7% identity Open · Scan
MA1565.1 NN 70-40% JASPAR GGAGGTGTGAAA 51.3% identity Open · Scan
M03563_2.00 NN 70-40% CisBP AAGGTGTGAAAAT 50.3% identity Open · Scan
MA0804.1 NN 70-40% JASPAR TTTCACACCTAGGTGTGAAA 50.2% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 518 aa
53-238

Region 53-238 0 PWM

Residues
186 aa
Domains
PF00907 · T-box
3D models
1 active PDB
Templates
4S0H
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 53-2381 model
Actions
Predicted = Low DIMER_A8K3J6:53:238_4s0h_E_1 4s0h 53-238 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
57-237PF00907T-boxoverlaps 53-238