ModCRE DB

Transcription factor

A8K3T5

Zinc finger protein 219

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 722 aa

40 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)35
MotifPredictionSourceDNA bindingSupportLogoActions
M00129_2.00 NN 70-40% CisBP AGACCCCCCAC 60.0% identity Open · Scan
MA0736.1 NN 70-40% JASPAR GACCCCCCGCGAAG 60.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 55.1% identity Open · Scan
M01438_2.00 NN 70-40% CisBP CTCAGCCCCA 55.1% identity Open · Scan
M08919_2.00 NN 70-40% CisBP ACAGTTACA 54.0% identity Open · Scan
MA1544.1 NN 70-40% JASPAR AAAACCGTTATTTG 54.0% identity Open · Scan
M08390_2.00 NN 70-40% CisBP GCTTTGTTGACTCAC 53.5% identity Open · Scan
M00641_2.00 NN 70-40% CisBP ATTGACCACT 53.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 53.0% identity Open · Scan
MA0163.1 NN 70-40% JASPAR GGGGCCCAAGGGGG 53.0% identity Open · Scan
M08194_2.00 NN 70-40% CisBP GATGGCGCCAC 52.7% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 52.1% identity Open · Scan
M07842_2.00 NN 70-40% CisBP CTCACCTG 52.1% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 52.1% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 52.1% identity Open · Scan
M03663_2.00 NN 70-40% CisBP TTTAACCCTTTC 52.0% identity Open · Scan
M03669_2.00 NN 70-40% CisBP GTACCGTTA 52.0% identity Open · Scan
MA0088.1 NN 70-40% JASPAR GATTTCCCATAATGCCTTGC 52.0% identity Open · Scan
MA0088.2 NN 70-40% JASPAR TACCCACAATGCATTG 52.0% identity Open · Scan
M08275_2.00 NN 70-40% CisBP CGCTCCCGGGCCCCC 51.9% identity Open · Scan
MA0138.1 NN 70-40% JASPAR GCGCTGTCCATGGTGCTGA 51.5% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 51.0% identity Open · Scan
M00608_2.00 NN 70-40% CisBP CCTGTTG 51.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 51.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 51.0% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 51.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 51.0% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 51.0% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.9% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 50.9% identity Open · Scan
M02731_2.00 NN 70-40% CisBP CACTTTCACTTT 50.0% identity Open · Scan
M07848_2.00 NN 70-40% CisBP CGCTGTCCATGGTGCT 50.0% identity Open · Scan
M08195_2.00 NN 70-40% CisBP CACTTTCACT 50.0% identity Open · Scan
MA0508.1 NN 70-40% JASPAR AGAAAGTGAAAGTGA 50.0% identity Open · Scan
MA1650.1 NN 70-40% JASPAR CCCCGCGCACCC 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A8K3T5_A8K3T5_HUMAN:494:548_6u9q_A_1 ModCRE Homology model AGTTATAGAGCA Region 494-548 · 1 3D model Open · Scan
TFS_tr_A8K3T5_A8K3T5_HUMAN:498:549_3uk3_C_1 ModCRE Homology model CCTGATGCATC Region 498-549 · 1 3D model Open · Scan
TFS_tr_A8K3T5_A8K3T5_HUMAN:498:549_4is1_C_1 ModCRE Homology model CCTGAATCATC Region 498-549 · 1 3D model Open · Scan
TFS_tr_A8K3T5_A8K3T5_HUMAN:498:550_3uk3_D_1 ModCRE Homology model ATTGATCCAG Region 498-550 · 1 3D model Open · Scan
TFS_tr_A8K3T5_A8K3T5_HUMAN:498:550_4is1_D_1 ModCRE Homology model GTTGACCCCG Region 498-550 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 722 aa
494-550

Region 494-550 5 PWM

Residues
57 aa
Domains
PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 3UK3, 4IS1, 6U9Q
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 494-5506 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_A8K3T5_A8K3T5_HUMAN:500:549_1llm_D_1 1llm 500-549 View model · PDB
Predicted = Low TFS_tr_A8K3T5_A8K3T5_HUMAN:494:548_6u9q_A_1 6u9q 494-548 View model · PDB
Predicted = Low TFS_tr_A8K3T5_A8K3T5_HUMAN:498:549_3uk3_C_1 3uk3 498-549 View model · PDB
Predicted = Low TFS_tr_A8K3T5_A8K3T5_HUMAN:498:549_4is1_C_1 4is1 498-549 View model · PDB
Predicted = Low TFS_tr_A8K3T5_A8K3T5_HUMAN:498:550_3uk3_D_1 3uk3 498-550 View model · PDB
Predicted = Low TFS_tr_A8K3T5_A8K3T5_HUMAN:498:550_4is1_D_1 4is1 498-550 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
3 4is1 494:553 498 549 P:C · DNA:A,B 59.6% / 78.8% 100 View · PDB TFS_tr_A8K3T5_A8K3T5_HUMAN:498:549_4is1_C_1
4 3uk3 494:553 498 549 P:C · DNA:A,B 59.6% / 78.8% 100 View · PDB TFS_tr_A8K3T5_A8K3T5_HUMAN:498:549_3uk3_C_1
1 4is1 494:553 498 550 P:D · DNA:A,B 58.5% / 79.2% 98 View · PDB TFS_tr_A8K3T5_A8K3T5_HUMAN:498:550_4is1_D_1
2 3uk3 494:553 498 550 P:D · DNA:A,B 58.5% / 79.2% 98 View · PDB TFS_tr_A8K3T5_A8K3T5_HUMAN:498:550_3uk3_D_1
5 6u9q 494:553 494 548 P:A · DNA:B,C 49.1% / 61.8% 61 View · PDB TFS_tr_A8K3T5_A8K3T5_HUMAN:494:548_6u9q_A_1
1 1llm 494:553 500,500 549,549 P:C,D · DNA:A,B 36.0% / 50.0% 57,58 View · PDB DIMER_tr_A8K3T5_A8K3T5_HUMAN:500:549_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
57-79PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
85-107PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
274-296PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
302-324PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
500-520PF00096Zinc finger, C2H2 typeoverlaps 494-550