Region 77-128 2 PWM
- Residues
- 52 aa
- Domains
- PF14929 · TAF RNA Polymerase I subunit A
- 3D models
- 2 active PDBs · 2 summary rows
- Templates
- 4J19
- Sources
- Predicted = Low
Transcription factor
A8K4K5
TATA box-binding protein-associated factor RNA polymerase I subunit A (TATA box-binding protein-associated factor 1A) (Transcription initiation factor SL1/TIF-IB subunit A)
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 450 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE2
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| DIMER_tr_A8K4K5_A8K4K5_HUMAN:77:128_4j19_A_1 | ModCRE | Homology model | TAAAAATTTAGAATTTGG | Region 77-128 · 1 3D model | Open · Scan | |
| TFS_tr_A8K4K5_A8K4K5_HUMAN:77:128_4j19_A_1 | ModCRE | Homology model | TGAAAATTTAGAAAGGGG | Region 77-128 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
450 aa
77-128
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
2 active PDB models
2 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 77-1282 models · 2 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_tr_A8K4K5_A8K4K5_HUMAN:77:128_4j19_A_1 | 4j19 | 77-128 | View model · PDB |
| Predicted = Low | TFS_tr_A8K4K5_A8K4K5_HUMAN:77:128_4j19_A_1 | 4j19 | 77-128 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 4j19 | 77:128 | 77,77 | 128,128 | P:A,B · DNA:C,D | 33.9% / 50.0% | 67,68 | View · PDB TFS_tr_A8K4K5_A8K4K5_HUMAN:77:128_4j19_A_1 |
| 1 | 4j19 | 77:128 | 77,77 | 128,128 | P:A,B · DNA:C,D | 33.9% / 50.0% | 67,68 | View · PDB DIMER_tr_A8K4K5_A8K4K5_HUMAN:77:128_4j19_A_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 63-422 | PF14929 | TAF RNA Polymerase I subunit A | overlaps 77-128 |