ModCRE DB

Transcription factor

A8K5C8

cDNA FLJ77537, highly similar to Homo sapiens zinc finger protein 26 (KOX 20) (ZNF26), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 533 aa

58 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)52
MotifPredictionSourceDNA bindingSupportLogoActions
M00944_2.00 NN 70-40% CisBP TCGCTATAA 62.3% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 62.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 62.3% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 61.1% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 61.1% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 60.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 58.8% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 58.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 58.8% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 58.4% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 57.5% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 56.6% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 55.6% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 55.2% identity Open · Scan
M07706_2.00 NN 70-40% CisBP GTCTTTGAGAGGGCCCAGATGTTGGACTTA 55.2% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 54.9% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 54.8% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 54.8% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 54.6% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 54.4% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 54.1% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 54.0% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 53.9% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 53.7% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 53.6% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 53.2% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 53.2% identity Open · Scan
M07657_2.00 NN 70-40% CisBP CCCCTGCATGTCCCCATTTTT 53.1% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 52.9% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 52.8% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 52.7% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 52.7% identity Open · Scan
M08234_2.00 NN 70-40% CisBP GTCAACTTGACTGGGCCA 52.7% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 52.4% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 52.1% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 52.0% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 51.9% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 51.8% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 51.7% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 51.7% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 51.6% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 50.9% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.9% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 50.7% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 50.7% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 50.2% identity Open · Scan
M07747_2.00 NN 70-40% CisBP TGGTCTATAAAGGGCCTGGTT 50.1% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 50.0% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 50.0% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 50.0% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_A8K5C8_A8K5C8_HUMAN:369:417_1llm_D_1 ModCRE Homology model CCCCGCGCCGGG Region 369-417 · 1 3D model Open · Scan
TFS_tr_A8K5C8_A8K5C8_HUMAN:202:500_7w1m_H_1 ModCRE Homology model GTTGAAACGCGGGGGGCAGCGCGGCGACCCAGAGCGGCCCCTT Region 202-500 · 1 3D model Open · Scan
TFS_tr_A8K5C8_A8K5C8_HUMAN:227:505_5wjq_D_1 ModCRE Homology model GGGTTAGGCCCGGGCCTGGGGTCAAGCC Region 227-505 · 1 3D model Open · Scan
TFS_tr_A8K5C8_A8K5C8_HUMAN:229:505_5v3j_E_1 ModCRE Homology model AAACAGGGAAAAGAAACCCCCTTTGG Region 229-505 · 1 3D model Open · Scan
TFS_tr_A8K5C8_A8K5C8_HUMAN:229:505_5v3m_C_1 ModCRE Homology model AGGGGGGGCCCGGAGCGCGCGGAGGG Region 229-505 · 1 3D model Open · Scan
TFS_tr_A8K5C8_A8K5C8_HUMAN:379:532_2i13_A_1 ModCRE Homology model ACTCAGCAGGGGTTAGAGTGT Region 379-532 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 533 aa
202-532

Region 202-532 6 PWM

Residues
331 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 202-5326 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_A8K5C8_A8K5C8_HUMAN:369:417_1llm_D_1 1llm 369-417 View model · PDB
Predicted = Low TFS_tr_A8K5C8_A8K5C8_HUMAN:202:500_7w1m_H_1 7w1m 202-500 View model · PDB
Predicted = Low TFS_tr_A8K5C8_A8K5C8_HUMAN:227:505_5wjq_D_1 5wjq 227-505 View model · PDB
Predicted = Low TFS_tr_A8K5C8_A8K5C8_HUMAN:229:505_5v3j_E_1 5v3j 229-505 View model · PDB
Predicted = Low TFS_tr_A8K5C8_A8K5C8_HUMAN:229:505_5v3m_C_1 5v3m 229-505 View model · PDB
Predicted = Low TFS_tr_A8K5C8_A8K5C8_HUMAN:379:532_2i13_A_1 2i13 379-532 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 174:533 379 532 P:A · DNA:C,D 53.9% / 70.8% 100 View · PDB TFS_tr_A8K5C8_A8K5C8_HUMAN:379:532_2i13_A_1
1 5wjq 174:533 227 505 P:D · DNA:A,B 50.2% / 66.3% 99 View · PDB TFS_tr_A8K5C8_A8K5C8_HUMAN:227:505_5wjq_D_1
2 5v3m 174:533 229 505 P:C · DNA:A,B 48.7% / 65.0% 100 View · PDB TFS_tr_A8K5C8_A8K5C8_HUMAN:229:505_5v3m_C_1
3 5v3j 174:533 229 505 P:E · DNA:A,B 48.7% / 65.0% 100 View · PDB TFS_tr_A8K5C8_A8K5C8_HUMAN:229:505_5v3j_E_1
1 1llm 174:533 369,369 417,417 P:C,D · DNA:A,B 42.9% / 57.1% 56,57 View · PDB DIMER_tr_A8K5C8_A8K5C8_HUMAN:369:417_1llm_D_1
5 7w1m 174:533 202 500 P:H · DNA:F,G 34.1% / 51.9% 92 View · PDB TFS_tr_A8K5C8_A8K5C8_HUMAN:202:500_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
14-54PF01352KRAB boxNo overlap with loaded model regions
175-196PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
202-224PF00096Zinc finger, C2H2 typeoverlaps 202-532
230-252PF00096Zinc finger, C2H2 typeoverlaps 202-532
260-280PF00096Zinc finger, C2H2 typeoverlaps 202-532
286-308PF00096Zinc finger, C2H2 typeoverlaps 202-532
314-336PF00096Zinc finger, C2H2 typeoverlaps 202-532
342-364PF00096Zinc finger, C2H2 typeoverlaps 202-532
370-392PF00096Zinc finger, C2H2 typeoverlaps 202-532
400-420PF00096Zinc finger, C2H2 typeoverlaps 202-532
426-448PF00096Zinc finger, C2H2 typeoverlaps 202-532
454-476PF00096Zinc finger, C2H2 typeoverlaps 202-532
482-504PF00096Zinc finger, C2H2 typeoverlaps 202-532
511-532PF00096Zinc finger, C2H2 typeoverlaps 202-532