ModCRE DB

Transcription factor

A8K5K3

cDNA FLJ76841, highly similar to Homo sapiens microphthalmia-associated transcription factor (MITF), transcript variant 1, mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 520 aa

7 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
MA0620.2 NN 70+% JASPAR TAAGGTCACGTGACCTTA 98.6% identity Open · Scan
MA0620.1 NN 70+% JASPAR GGTCACGTGG 93.1% identity Open · Scan
M09475_2.00 NN 70+% CisBP GTCACATGAC 92.8% identity Open · Scan
Nearest Neighbor (70% - 40%)4
MotifPredictionSourceDNA bindingSupportLogoActions
M06003_2.00 NN 70-40% CisBP TCACGTG 62.6% identity Open · Scan
MA0871.1 NN 70-40% JASPAR ATCACGTGAC 58.3% identity Open · Scan
M01736_2.00 NN 70-40% CisBP CCACGTGACC 55.0% identity Open · Scan
M01762_2.00 NN 70-40% CisBP ATCACGTGAT 54.5% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 520 aa
302-357

Region 302-357 0 PWM

Residues
56 aa
Domains
PF00010 · Helix-loop-helix DNA-binding domain
3D models
1 active PDB
Templates
4H10
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 302-3571 model
Actions
Predicted = Low DIMER_A8K5K3:302:357_4h10_B_1 4h10 302-357 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
56-194PF15951MITF/TFEB/TFEC/TFE3 N-terminusNo overlap with loaded model regions
306-359PF00010Helix-loop-helix DNA-binding domainoverlaps 302-357
391-515PF11851Domain of unknown function (DUF3371)No overlap with loaded model regions