ModCRE DB

Transcription factor

A8K5V0

Pre-B-cell leukemia transcription factor 1 (Homeobox protein PBX1)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 430 aa

19 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)7
MotifPredictionSourceDNA bindingSupportLogoActions
MA0070.1 NN 70+% JASPAR CCATCAATCAAA 99.3% identity Open · Scan
M05364_2.00 NN 70+% CisBP TTGATTGATG 99.0% identity Open · Scan
MA1114.1 NN 70+% JASPAR GGGTGAGTGACAGGCGG 82.5% identity Open · Scan
M06246_2.00 NN 70+% CisBP TTTTGACA 80.2% identity Open · Scan
MA1113.1 NN 70+% JASPAR GTGATTGACAGG 79.8% identity Open · Scan
M09560_2.00 NN 70+% CisBP TTGATTGACAGG 78.7% identity Open · Scan
M08422_2.00 NN 70+% CisBP ACACAAT 70.3% identity Open · Scan
Nearest Neighbor (70% - 40%)12
MotifPredictionSourceDNA bindingSupportLogoActions
M00276_2.00 NN 70-40% CisBP ACTAATTAATT 65.9% identity Open · Scan
M06335_2.00 NN 70-40% CisBP ATGATACC 55.5% identity Open · Scan
M02219_2.00 NN 70-40% CisBP TTAATATA 52.5% identity Open · Scan
M04951_2.00 NN 70-40% CisBP TGACAGCTGTCA 51.7% identity Open · Scan
MA0775.1 NN 70-40% JASPAR TTGACAGG 51.7% identity Open · Scan
M02060_2.00 NN 70-40% CisBP TTTGACAGCA 50.0% identity Open · Scan
M02103_2.00 NN 70-40% CisBP AGGTGTAAA 50.0% identity Open · Scan
M03165_2.00 NN 70-40% CisBP TTGACAG 50.0% identity Open · Scan
M06490_2.00 NN 70-40% CisBP TGACAG 50.0% identity Open · Scan
MA0498.1 NN 70-40% JASPAR AGCTGTCACTCACCT 50.0% identity Open · Scan
MA0498.2 NN 70-40% JASPAR TTGACAG 50.0% identity Open · Scan
MA0774.1 NN 70-40% JASPAR TTGACAGC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 430 aa
232-305

Region 232-305 0 PWM

Residues
74 aa
Domains
PF03792 · PBC domain PF05920 · Homeobox KN domain
3D models
1 active PDB
Templates
5ZJR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 232-3051 model
Actions
Predicted = Low DIMER_A8K5V0:232:305_5zjr_B_1 5zjr 232-305 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
42-232PF03792PBC domainoverlaps 232-305
252-290PF05920Homeobox KN domainoverlaps 232-305