ModCRE DB

Transcription factor

A8K7X9

cDNA FLJ76922, highly similar to Homo sapiens zinc finger protein 272 (ZNF272), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 562 aa

61 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
M07727_2.00 NN 70+% CisBP CGCCGCCTCCCC 99.8% identity Open · Scan
MA1596.1 NN 70+% JASPAR GCCTCAGCCTCCCGAG 99.8% identity Open · Scan
Nearest Neighbor (70% - 40%)59
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 64.7% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 63.3% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 61.7% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 60.9% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.4% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 60.4% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.4% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 59.3% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 59.3% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 59.3% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 58.4% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 58.2% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 58.1% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 58.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.6% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 56.9% identity Open · Scan
M08365_2.00 NN 70-40% CisBP GCCAGCAGCCATCAG 56.1% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 55.4% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 55.2% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 55.0% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 54.7% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.5% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 54.5% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 54.1% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 53.7% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 53.7% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 53.5% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 53.5% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 53.5% identity Open · Scan
M08381_2.00 NN 70-40% CisBP ACATTTTGTCCTCCTAGTCCT 53.5% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 52.5% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 52.2% identity Open · Scan
M07638_2.00 NN 70-40% CisBP TGCAGCTCCCTGCCC 52.2% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 52.2% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 52.1% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 52.1% identity Open · Scan
M00019_2.00 NN 70-40% CisBP ACCCCTAATT 52.0% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 51.9% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 51.5% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 51.3% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 51.2% identity Open · Scan
M07634_2.00 NN 70-40% CisBP AAACGTCCACG 51.0% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 51.0% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 51.0% identity Open · Scan
M01531_2.00 NN 70-40% CisBP CCCCCCCTAAAT 50.9% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 50.9% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 50.7% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 50.4% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 50.4% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 50.4% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 50.3% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.3% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 50.2% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 50.1% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 50.1% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 50.0% identity Open · Scan
M10391_2.00 NN 70-40% CisBP TACCCCACATTTATTTA 50.0% identity Open · Scan
MA0747.1 NN 70-40% JASPAR GCCACGCCCACT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 562 aa
195-302

Region 195-302 0 PWM

Residues
108 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5EH2
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 195-3021 model
Actions
Predicted = Low TFS_A8K7X9:195:302_5eh2_F_1 5eh2 195-302 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
12-53PF01352KRAB boxNo overlap with loaded model regions
196-218PF00096Zinc finger, C2H2 typeoverlaps 195-302
224-246PF00096Zinc finger, C2H2 typeoverlaps 195-302
252-274PF00096Zinc finger, C2H2 typeoverlaps 195-302
280-302PF00096Zinc finger, C2H2 typeoverlaps 195-302
336-358PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
364-386PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
392-414PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
420-439PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
448-470PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
476-498PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions