ModCRE DB

Transcription factor

A8K8K6

cDNA FLJ76430, highly similar to Homo sapiens zinc finger protein 165 (ZNF165), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 485 aa

81 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)75
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 67.4% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 66.6% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 60.2% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 60.2% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 60.2% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 60.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 60.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 60.0% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 59.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 58.8% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 58.8% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 58.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 57.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 57.8% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 57.5% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 57.1% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 56.9% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 56.4% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 56.4% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 55.4% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 55.3% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 55.3% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 55.3% identity Open · Scan
M08365_2.00 NN 70-40% CisBP GCCAGCAGCCATCAG 55.3% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 54.8% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 54.8% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 54.4% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.2% identity Open · Scan
M07723_2.00 NN 70-40% CisBP CCGCTGCTCCCTGCT 54.1% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 53.8% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 53.7% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 53.7% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 53.7% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 53.5% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 53.2% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 53.2% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 53.2% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 52.9% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 52.8% identity Open · Scan
M00224_2.00 NN 70-40% CisBP CCCGCCCC 52.7% identity Open · Scan
M01039_2.00 NN 70-40% CisBP CCCCCTA 52.7% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 52.6% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 52.5% identity Open · Scan
MA1515.1 NN 70-40% JASPAR CACCACGCCCA 52.5% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 52.3% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 52.2% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 52.1% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 52.0% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 51.8% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 51.5% identity Open · Scan
M04463_2.00 NN 70-40% CisBP CACCACGCCCA 51.2% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 51.2% identity Open · Scan
MA0039.1 NN 70-40% JASPAR TAAAGGAAGG 51.2% identity Open · Scan
MA0039.3 NN 70-40% JASPAR CCACACCCTGC 51.2% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 51.1% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 51.0% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 51.0% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 51.0% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 50.9% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 50.8% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 50.7% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 50.5% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 50.5% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 50.5% identity Open · Scan
M07650_2.00 NN 70-40% CisBP GGTCTATAAAAGGGGGGCCGCGGGGGGG 50.4% identity Open · Scan
M07691_2.00 NN 70-40% CisBP CCTGCAGCCACCTTGGCCTTG 50.4% identity Open · Scan
M08358_2.00 NN 70-40% CisBP CCCTCCCCCTCC 50.3% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 50.2% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 50.2% identity Open · Scan
M00769_2.00 NN 70-40% CisBP ACTCCCCC 50.0% identity Open · Scan
M01883_2.00 NN 70-40% CisBP TGCCCCTGA 50.0% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 50.0% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 50.0% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 50.0% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_A8K8K6_A8K8K6_HUMAN:426:477_1llm_D_1 ModCRE Homology model TTTCGCGCGAAA Region 426-477 · 1 3D model Open · Scan
TFS_tr_A8K8K6_A8K8K6_HUMAN:287:478_5v3j_E_1 ModCRE Homology model CCCTAGCCGGGGGGTGGGGCCCGCAG Region 287-478 · 1 3D model Open · Scan
TFS_tr_A8K8K6_A8K8K6_HUMAN:287:478_5v3m_C_1 ModCRE Homology model GGGGAGGGGCGCGCGGGGGATATTCT Region 287-478 · 1 3D model Open · Scan
TFS_tr_A8K8K6_A8K8K6_HUMAN:297:478_5wjq_D_1 ModCRE Homology model GGGGGGCCGGGGCGGGGGGGCCGGGGT Region 297-478 · 1 3D model Open · Scan
TFS_tr_A8K8K6_A8K8K6_HUMAN:327:478_2i13_A_1 ModCRE Homology model TTAGCCCAGTACTACTATATT Region 327-478 · 1 3D model Open · Scan
TFS_tr_A8K8K6_A8K8K6_HUMAN:369:478_5ei9_E_1 ModCRE Homology model CCGGGGGGGGGGGCCGG Region 369-478 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 485 aa
287-478

Region 287-478 6 PWM

Residues
192 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 287-4786 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_A8K8K6_A8K8K6_HUMAN:426:477_1llm_D_1 1llm 426-477 View model · PDB
Predicted = Low TFS_tr_A8K8K6_A8K8K6_HUMAN:287:478_5v3j_E_1 5v3j 287-478 View model · PDB
Predicted = Low TFS_tr_A8K8K6_A8K8K6_HUMAN:287:478_5v3m_C_1 5v3m 287-478 View model · PDB
Predicted = Low TFS_tr_A8K8K6_A8K8K6_HUMAN:297:478_5wjq_D_1 5wjq 297-478 View model · PDB
Predicted = Low TFS_tr_A8K8K6_A8K8K6_HUMAN:327:478_2i13_A_1 2i13 327-478 View model · PDB
Predicted = Low TFS_tr_A8K8K6_A8K8K6_HUMAN:369:478_5ei9_E_1 5ei9 369-478 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 287:482 369 478 P:E · DNA:A,B 59.1% / 70.9% 99 View · PDB TFS_tr_A8K8K6_A8K8K6_HUMAN:369:478_5ei9_E_1
1 5wjq 287:482 297 478 P:D · DNA:A,B 51.6% / 69.4% 64 View · PDB TFS_tr_A8K8K6_A8K8K6_HUMAN:297:478_5wjq_D_1
4 2i13 287:482 327 478 P:A · DNA:C,D 51.3% / 68.4% 98 View · PDB TFS_tr_A8K8K6_A8K8K6_HUMAN:327:478_2i13_A_1
1 1llm 287:482 426,426 477,477 P:C,D · DNA:A,B 46.2% / 61.5% 59,61 View · PDB DIMER_tr_A8K8K6_A8K8K6_HUMAN:426:477_1llm_D_1
2 5v3m 287:482 287 478 P:C · DNA:A,B 43.9% / 63.3% 69 View · PDB TFS_tr_A8K8K6_A8K8K6_HUMAN:287:478_5v3m_C_1
3 5v3j 287:482 287 478 P:E · DNA:A,B 43.9% / 63.3% 69 View · PDB TFS_tr_A8K8K6_A8K8K6_HUMAN:287:478_5v3j_E_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
45-132PF02023SCAN domainNo overlap with loaded model regions
344-366PF00096Zinc finger, C2H2 typeoverlaps 287-478
372-394PF00096Zinc finger, C2H2 typeoverlaps 287-478
402-421PF00096Zinc finger, C2H2 typeoverlaps 287-478
428-450PF00096Zinc finger, C2H2 typeoverlaps 287-478
456-478PF00096Zinc finger, C2H2 typeoverlaps 287-478