ModCRE DB

Transcription factor

A8KAD9

Zinc finger protein 561

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 417 aa

46 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)42
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 60.0% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 59.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 57.9% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 57.8% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 57.6% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 57.6% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 57.6% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 57.6% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 57.3% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 57.2% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 56.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 56.8% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 55.9% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 55.2% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 55.2% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 54.5% identity Open · Scan
M08541_2.00 NN 70-40% CisBP CTAAGCCAC 54.2% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 54.0% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 53.9% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 53.6% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 53.2% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 53.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 52.9% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 52.9% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 52.3% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 52.3% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 51.9% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 51.8% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 51.8% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 51.7% identity Open · Scan
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 51.6% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 51.5% identity Open · Scan
M07623_2.00 NN 70-40% CisBP GTCTAATAGAGCTGGGCTGCA 51.4% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 51.2% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.2% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 50.7% identity Open · Scan
MA1592.1 NN 70-40% JASPAR GGTATGAGTTCTCGCT 50.6% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 50.2% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.0% identity Open · Scan
M04555_2.00 NN 70-40% CisBP GCCACGCCCCCGCCACGCCCAC 50.0% identity Open · Scan
MA0746.1 NN 70-40% JASPAR GCCACGCCCCC 50.0% identity Open · Scan
MA1512.1 NN 70-40% JASPAR GCCACGCCCAC 50.0% identity Open · Scan
ModCRE4
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A8KAD9_A8KAD9_HUMAN:124:403_5wjq_D_1 ModCRE Homology model CCGGGGGGCGGGGGAGGGGGCCCGTCCA Region 124-403 · 1 3D model Open · Scan
TFS_tr_A8KAD9_A8KAD9_HUMAN:159:416_5v3j_E_1 ModCRE Homology model ACCCCCGGGGGGGAACTGGTGGTA Region 159-416 · 1 3D model Open · Scan
TFS_tr_A8KAD9_A8KAD9_HUMAN:159:416_5v3m_C_1 ModCRE Homology model CCCCCGGGGGGGCGTTGGGGGCCCC Region 159-416 · 1 3D model Open · Scan
TFS_tr_A8KAD9_A8KAD9_HUMAN:249:402_2i13_A_1 ModCRE Homology model TTTTAGCTAAAACTATTGAAA Region 249-402 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 417 aa
118-416

Region 118-416 4 PWM

Residues
299 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 118-4166 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_A8KAD9_A8KAD9_HUMAN:350:401_1llm_C_1 1llm 350-401 View model · PDB
Predicted = Low TFS_tr_A8KAD9_A8KAD9_HUMAN:118:398_7w1m_H_1 7w1m 118-398 View model · PDB
Predicted = Low TFS_tr_A8KAD9_A8KAD9_HUMAN:124:403_5wjq_D_1 5wjq 124-403 View model · PDB
Predicted = Low TFS_tr_A8KAD9_A8KAD9_HUMAN:159:416_5v3j_E_1 5v3j 159-416 View model · PDB
Predicted = Low TFS_tr_A8KAD9_A8KAD9_HUMAN:159:416_5v3m_C_1 5v3m 159-416 View model · PDB
Predicted = Low TFS_tr_A8KAD9_A8KAD9_HUMAN:249:402_2i13_A_1 2i13 249-402 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1llm 118:416 350,350 401,401 P:C,D · DNA:A,B 53.8% / 61.5% 59,61 View · PDB DIMER_tr_A8KAD9_A8KAD9_HUMAN:350:401_1llm_C_1
4 2i13 118:416 249 402 P:A · DNA:C,D 51.3% / 67.5% 100 View · PDB TFS_tr_A8KAD9_A8KAD9_HUMAN:249:402_2i13_A_1
1 5wjq 118:416 124 403 P:D · DNA:A,B 49.6% / 66.1% 99 View · PDB TFS_tr_A8KAD9_A8KAD9_HUMAN:124:403_5wjq_D_1
2 5v3m 118:416 159 416 P:C · DNA:A,B 48.4% / 66.7% 93 View · PDB TFS_tr_A8KAD9_A8KAD9_HUMAN:159:416_5v3m_C_1
3 5v3j 118:416 159 416 P:E · DNA:A,B 48.4% / 66.7% 93 View · PDB TFS_tr_A8KAD9_A8KAD9_HUMAN:159:416_5v3j_E_1
5 7w1m 118:416 118 398 P:H · DNA:F,G 29.0% / 49.0% 87 View · PDB TFS_tr_A8KAD9_A8KAD9_HUMAN:118:398_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
128-150PF00096Zinc finger, C2H2 typeoverlaps 118-416
212-234PF00096Zinc finger, C2H2 typeoverlaps 118-416
240-262PF00096Zinc finger, C2H2 typeoverlaps 118-416
268-290PF00096Zinc finger, C2H2 typeoverlaps 118-416
296-318PF00096Zinc finger, C2H2 typeoverlaps 118-416
324-346PF00096Zinc finger, C2H2 typeoverlaps 118-416
352-374PF00096Zinc finger, C2H2 typeoverlaps 118-416
380-402PF00096Zinc finger, C2H2 typeoverlaps 118-416