ModCRE DB

Transcription factor

A8MXY4 - ZNF99

Zinc finger protein 99

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 864 aa

85 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M00955_2.00 NN 70+% CisBP ACGTCCTCT 75.2% identity Open · Scan
Nearest Neighbor (70% - 40%)84
MotifPredictionSourceDNA bindingSupportLogoActions
M07715_2.00 NN 70-40% CisBP CCGCCGCCGCCGTGG 69.1% identity Open · Scan
M07575_2.00 NN 70-40% CisBP TCTCCAAGGCGGCCAGCA 66.6% identity Open · Scan
M08295_2.00 NN 70-40% CisBP CTGCTGGAATCTCCA 66.4% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 64.2% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 64.2% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 64.2% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 64.2% identity Open · Scan
M08921_2.00 NN 70-40% CisBP CCTCATTCTTCTTGGACATG 64.2% identity Open · Scan
M08381_2.00 NN 70-40% CisBP ACATTTTGTCCTCCTAGTCCT 64.1% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 63.6% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 63.5% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 63.1% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 63.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 63.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 63.0% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 62.1% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 61.9% identity Open · Scan
MA1599.1 NN 70-40% JASPAR CGGGCCAAGCCCCTAT 61.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 61.1% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 61.1% identity Open · Scan
M07586_2.00 NN 70-40% CisBP GGGACCCGGGTGGGGGCGTCCCCC 61.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.0% identity Open · Scan
M07687_2.00 NN 70-40% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 59.7% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 59.1% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 58.9% identity Open · Scan
M07775_2.00 NN 70-40% CisBP GCCGAAACCCGGG 58.8% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 58.7% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 58.7% identity Open · Scan
M07618_2.00 NN 70-40% CisBP CCTTTGGTGCTC 58.6% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 58.4% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 58.3% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 58.3% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 58.3% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 57.8% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 57.6% identity Open · Scan
M07767_2.00 NN 70-40% CisBP AAAAACCCCAGA 57.6% identity Open · Scan
M07754_2.00 NN 70-40% CisBP CGCCCCCTCCCT 57.1% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 56.9% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 56.9% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 56.7% identity Open · Scan
M07701_2.00 NN 70-40% CisBP CCTGGGCTAGGCCCTGGC 56.6% identity Open · Scan
M07565_2.00 NN 70-40% CisBP CCTCTGGGGGCTCGTCCA 56.3% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 56.1% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 56.0% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 55.7% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 55.4% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 55.3% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 55.2% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 55.1% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 55.1% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 54.7% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 54.5% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 54.4% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 54.3% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 53.9% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 53.8% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 53.1% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 52.7% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 52.7% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 52.6% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 52.6% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 52.5% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 52.5% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 52.3% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 51.9% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 51.7% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 51.6% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 51.6% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 51.5% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 51.4% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 51.4% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 51.3% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 51.3% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 51.3% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 51.2% identity Open · Scan
MA1155.1 NN 70-40% JASPAR TGCACACACTGAAAA 51.2% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 51.0% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 51.0% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 51.0% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 50.9% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 50.7% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 50.5% identity Open · Scan
M08312_2.00 NN 70-40% CisBP ATTGGGTTTCTGTTGCTT 50.4% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.2% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 864 aa
508-784

Region 508-784 0 PWM

Residues
277 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5V3J
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 508-7841 model
Actions
Predicted = Low TFS_A8MXY4:508:784_5v3j_E_1 5v3j 508-784 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
3-44PF01352KRAB boxNo overlap with loaded model regions
257-279PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
285-307PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
313-335PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
341-363PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
373-391PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
397-419PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
425-447PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
453-475PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
481-503PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
509-531PF00096Zinc finger, C2H2 typeoverlaps 508-784
537-559PF00096Zinc finger, C2H2 typeoverlaps 508-784
565-587PF00096Zinc finger, C2H2 typeoverlaps 508-784
593-615PF00096Zinc finger, C2H2 typeoverlaps 508-784
621-643PF00096Zinc finger, C2H2 typeoverlaps 508-784
649-671PF00096Zinc finger, C2H2 typeoverlaps 508-784
677-699PF00096Zinc finger, C2H2 typeoverlaps 508-784
705-727PF00096Zinc finger, C2H2 typeoverlaps 508-784
733-755PF00096Zinc finger, C2H2 typeoverlaps 508-784
761-783PF00096Zinc finger, C2H2 typeoverlaps 508-784
789-811PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions