ModCRE DB

Transcription factor

B1B1S6 - Pix-1

Intestine-specific homeobox

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 245 aa

102 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
MA0654.1 NN 70+% JASPAR CTAATTAA 99.1% identity Open · Scan
Nearest Neighbor (70% - 40%)101
MotifPredictionSourceDNA bindingSupportLogoActions
M06322_2.00 NN 70-40% CisBP TTAATTA 68.1% identity Open · Scan
M00402_2.00 NN 70-40% CisBP TAATTAG 67.6% identity Open · Scan
M03278_2.00 NN 70-40% CisBP TTAATTTAATTAT 67.6% identity Open · Scan
M04917_2.00 NN 70-40% CisBP GTAATTAG 67.6% identity Open · Scan
M10741_2.00 NN 70-40% CisBP AACTAATTACCATTATCG 67.6% identity Open · Scan
MA0634.1 NN 70-40% JASPAR TCTAATTAAA 67.6% identity Open · Scan
MA0853.1 NN 70-40% JASPAR CGCATTAATTAATTACC 67.6% identity Open · Scan
MA0854.1 NN 70-40% JASPAR CGAATTAATTAATCACC 67.6% identity Open · Scan
M06318_2.00 NN 70-40% CisBP TTAATTA 67.1% identity Open · Scan
M06291_2.00 NN 70-40% CisBP TTAATTA 66.6% identity Open · Scan
MA0718.1 NN 70-40% JASPAR GCCAATTAAC 66.1% identity Open · Scan
M06326_2.00 NN 70-40% CisBP TTAATT 65.0% identity Open · Scan
M00452_2.00 NN 70-40% CisBP GCTAATTG 64.7% identity Open · Scan
M03204_2.00 NN 70-40% CisBP TTAATTGG 64.4% identity Open · Scan
M05367_2.00 NN 70-40% CisBP TTAATTAG 64.4% identity Open · Scan
MA0630.1 NN 70-40% JASPAR TTAATTGG 64.4% identity Open · Scan
MA0720.1 NN 70-40% JASPAR CTAATTAA 64.4% identity Open · Scan
MA1481.1 NN 70-40% JASPAR CTAATTAC 64.0% identity Open · Scan
M03076_2.00 NN 70-40% CisBP TTAATTAAATTAA 63.6% identity Open · Scan
M03855_2.00 NN 70-40% CisBP TAATTAGATTA 63.6% identity Open · Scan
MA0874.1 NN 70-40% JASPAR GTCCATTAATTAATGGA 63.6% identity Open · Scan
M02111_2.00 NN 70-40% CisBP GTTAATTAG 63.3% identity Open · Scan
MA0721.1 NN 70-40% JASPAR CTAATTAA 63.3% identity Open · Scan
M06489_2.00 NN 70-40% CisBP TTAATTA 62.9% identity Open · Scan
M10806_2.00 NN 70-40% CisBP AATTTTCACGCATGAGTTCAC 62.9% identity Open · Scan
MA0069.1 NN 70-40% JASPAR TTCACGCATGAGTT 62.9% identity Open · Scan
M03776_2.00 NN 70-40% CisBP TAATTGAATTA 61.9% identity Open · Scan
M00426_2.00 NN 70-40% CisBP GCTAATTGG 61.8% identity Open · Scan
MA0725.1 NN 70-40% JASPAR CTAATTAT 61.5% identity Open · Scan
M00354_2.00 NN 70-40% CisBP CCGATTA 61.2% identity Open · Scan
M06370_2.00 NN 70-40% CisBP TTAATTA 61.2% identity Open · Scan
MA0780.1 NN 70-40% JASPAR TAATCGATTA 61.2% identity Open · Scan
M03876_2.00 NN 70-40% CisBP TAATTAAATTA 61.0% identity Open · Scan
MA0681.1 NN 70-40% JASPAR TAATTTAATTA 60.9% identity Open · Scan
MA0713.1 NN 70-40% JASPAR TAATTTAATTA 60.9% identity Open · Scan
MA0726.1 NN 70-40% JASPAR CTAATTAG 60.9% identity Open · Scan
M03903_2.00 NN 70-40% CisBP ATAATTGATTAT 60.6% identity Open · Scan
M03819_2.00 NN 70-40% CisBP TAATCCGTTAATCCG 60.3% identity Open · Scan
M03828_2.00 NN 70-40% CisBP GTTAATTAACGTTAATTAAC 60.0% identity Open · Scan
M02078_2.00 NN 70-40% CisBP AATTAATTAGT 59.7% identity Open · Scan
M02079_2.00 NN 70-40% CisBP AATTAATTAGT 59.7% identity Open · Scan
M03896_2.00 NN 70-40% CisBP CTAATTAG 59.6% identity Open · Scan
M09208_2.00 NN 70-40% CisBP CCTAATCCTCTTA 59.0% identity Open · Scan
MA0467.1 NN 70-40% JASPAR AAGAGGATTAG 59.0% identity Open · Scan
M03236_2.00 NN 70-40% CisBP GTTAATCCGC 58.7% identity Open · Scan
MA0883.1 NN 70-40% JASPAR TGAACCGGATTAATGAA 58.7% identity Open · Scan
M05419_2.00 NN 70-40% CisBP CGATTAGTCACGGTT 58.5% identity Open · Scan
MA0680.1 NN 70-40% JASPAR TAATCGATTA 58.5% identity Open · Scan
MA0662.1 NN 70-40% JASPAR TCTAATTAAC 58.3% identity Open · Scan
MA0717.1 NN 70-40% JASPAR CCAATTAA 58.1% identity Open · Scan
MA0075.3 NN 70-40% JASPAR CTAATTAA 57.8% identity Open · Scan
M02082_2.00 NN 70-40% CisBP ATTGTACAAT 57.3% identity Open · Scan
M03887_2.00 NN 70-40% CisBP GATAATCGATTATC 57.3% identity Open · Scan
M02231_2.00 NN 70-40% CisBP TTAATTGG 57.1% identity Open · Scan
M02143_2.00 NN 70-40% CisBP TTAATTGG 56.8% identity Open · Scan
M03851_2.00 NN 70-40% CisBP CTAATTGA 56.6% identity Open · Scan
M02162_2.00 NN 70-40% CisBP TTAATTAG 56.3% identity Open · Scan
M03121_2.00 NN 70-40% CisBP TTAATTGG 56.2% identity Open · Scan
M06310_2.00 NN 70-40% CisBP TTAATTA 56.2% identity Open · Scan
MA0716.1 NN 70-40% JASPAR CTAATTAA 56.2% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 56.1% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 56.1% identity Open · Scan
M04941_2.00 NN 70-40% CisBP CTAATTAC 56.0% identity Open · Scan
M06552_2.00 NN 70-40% CisBP TTAATTA 55.7% identity Open · Scan
M09681_2.00 NN 70-40% CisBP CTAATCCG 55.7% identity Open · Scan
MA0648.1 NN 70-40% JASPAR GCTAATCCCC 55.7% identity Open · Scan
M04959_2.00 NN 70-40% CisBP GTAATTAC 55.0% identity Open · Scan
M09196_2.00 NN 70-40% CisBP TTGATGGATG 55.0% identity Open · Scan
MA0621.1 NN 70-40% JASPAR AATTAATTAGT 55.0% identity Open · Scan
MA0891.1 NN 70-40% JASPAR CCTAATCCGC 55.0% identity Open · Scan
MA1495.1 NN 70-40% JASPAR GTAATTAC 55.0% identity Open · Scan
M00417_2.00 NN 70-40% CisBP GCTAATTA 54.9% identity Open · Scan
MA0715.1 NN 70-40% JASPAR TAATTTAATTA 54.8% identity Open · Scan
M09210_2.00 NN 70-40% CisBP TAATTGAATTA 54.7% identity Open · Scan
M03250_2.00 NN 70-40% CisBP TTAATCCG 54.5% identity Open · Scan
M09569_2.00 NN 70-40% CisBP GTTAATCCCT 54.5% identity Open · Scan
MA0889.1 NN 70-40% JASPAR ACTAATTAGC 54.5% identity Open · Scan
M06312_2.00 NN 70-40% CisBP TTAATTA 54.3% identity Open · Scan
M00424_2.00 NN 70-40% CisBP ACTAATTA 54.1% identity Open · Scan
M03888_2.00 NN 70-40% CisBP GCGTGACGAATC 54.0% identity Open · Scan
M02123_2.00 NN 70-40% CisBP TTAATCCCT 53.9% identity Open · Scan
MA0711.1 NN 70-40% JASPAR TTAATCCG 53.8% identity Open · Scan
MA0894.1 NN 70-40% JASPAR GCTAATTGGC 53.7% identity Open · Scan
M00674_2.00 NN 70-40% CisBP TTAATCCC 53.3% identity Open · Scan
M03892_2.00 NN 70-40% CisBP GATAATTGATTATC 53.2% identity Open · Scan
M00428_2.00 NN 70-40% CisBP TTAATCCC 53.1% identity Open · Scan
M00440_2.00 NN 70-40% CisBP TTAATCCC 53.1% identity Open · Scan
MA0714.1 NN 70-40% JASPAR CTTAATCCC 53.1% identity Open · Scan
MA1547.1 NN 70-40% JASPAR ATAATCCC 53.1% identity Open · Scan
M02166_2.00 NN 70-40% CisBP CTAATTAC 52.6% identity Open · Scan
M06555_2.00 NN 70-40% CisBP AGTAACAGT 52.1% identity Open · Scan
M05057_2.00 NN 70-40% CisBP TTAATTAC 51.7% identity Open · Scan
MA0068.1 NN 70-40% JASPAR GAAAAATTTCCAATACTCCACTCCCCCCCC 51.6% identity Open · Scan
M04929_2.00 NN 70-40% CisBP CTAATCCG 51.5% identity Open · Scan
MA0682.2 NN 70-40% JASPAR CTAATCCC 51.5% identity Open · Scan
M06523_2.00 NN 70-40% CisBP TTAATTG 51.0% identity Open · Scan
M06539_2.00 NN 70-40% CisBP CTAATTA 50.8% identity Open · Scan
MA0075.1 NN 70-40% JASPAR AATTA 50.5% identity Open · Scan
M00349_2.00 NN 70-40% CisBP CTAATTAGC 50.0% identity Open · Scan
M02103_2.00 NN 70-40% CisBP AGGTGTAAA 50.0% identity Open · Scan
MA0068.2 NN 70-40% JASPAR CTAATTAG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 245 aa
82-140

Region 82-140 0 PWM

Residues
59 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 82-1401 model
Actions
Predicted = Low DIMER_B1B1S6:82:140_1fjl_A_1 1fjl 82-140 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
83-139PF00046Homeodomainoverlaps 82-140