ModCRE DB

Transcription factor

B2R6J0

cDNA, FLJ92971, highly similar to Homo sapiens SRY (sex determining region Y)-box 2 (SOX2), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 317 aa

40 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)9
MotifPredictionSourceDNA bindingSupportLogoActions
MA0143.4 NN 70+% JASPAR AAACAATGGAA 99.6% identity Open · Scan
MA0142.1 NN 70+% JASPAR CTTTGTTATGCAAAT 95.9% identity Open · Scan
M09694_2.00 NN 70+% CisBP AACAATGGAC 87.0% identity Open · Scan
MA1562.1 NN 70+% JASPAR CCGAACAATG 86.6% identity Open · Scan
M03983_2.00 NN 70+% CisBP AAACAATTTCAGTGTTT 80.0% identity Open · Scan
M03508_2.00 NN 70+% CisBP AACAATAACATTGTT 76.2% identity Open · Scan
MA1152.1 NN 70+% JASPAR CTATTGTTTT 76.2% identity Open · Scan
M03979_2.00 NN 70+% CisBP AAACAATAACATTGTTT 73.9% identity Open · Scan
MA0866.1 NN 70+% JASPAR AACAATGGTAGTGTT 72.5% identity Open · Scan
Nearest Neighbor (70% - 40%)31
MotifPredictionSourceDNA bindingSupportLogoActions
MA0084.1 NN 70-40% JASPAR GTAAACAAT 67.9% identity Open · Scan
MA0869.1 NN 70-40% JASPAR AACAATTTCAGTGTT 64.1% identity Open · Scan
MA0868.1 NN 70-40% JASPAR AACAATGTGCAGTGTT 64.0% identity Open · Scan
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 63.6% identity Open · Scan
M09410_2.00 NN 70-40% CisBP TCCTTTGTTCTC 62.8% identity Open · Scan
MA0867.1 NN 70-40% JASPAR GAACAATTGCAGTGTT 62.8% identity Open · Scan
M03533_2.00 NN 70-40% CisBP AACAATTGCATTGTT 62.5% identity Open · Scan
M00197_2.00 NN 70-40% CisBP AAAACAAT 61.1% identity Open · Scan
MA0077.1 NN 70-40% JASPAR CCATTGTTC 60.7% identity Open · Scan
MA0078.1 NN 70-40% JASPAR CTCATTGTC 59.2% identity Open · Scan
MA1561.1 NN 70-40% JASPAR ACCGAACAATG 57.7% identity Open · Scan
M02488_2.00 NN 70-40% CisBP CATTGTTTTC 57.6% identity Open · Scan
M03981_2.00 NN 70-40% CisBP ATTGTTCGGTGGT 57.5% identity Open · Scan
M03516_2.00 NN 70-40% CisBP AACAATGTTCATTGTT 55.5% identity Open · Scan
M03537_2.00 NN 70-40% CisBP ATGAATTGCAGTCAT 54.1% identity Open · Scan
M00212_2.00 NN 70-40% CisBP GAACAATA 53.4% identity Open · Scan
M05892_2.00 NN 70-40% CisBP AAACAATAGA 53.4% identity Open · Scan
M09404_2.00 NN 70-40% CisBP TAACAATA 53.4% identity Open · Scan
M11309_2.00 NN 70-40% CisBP TTAACAATAC 53.4% identity Open · Scan
MA0087.1 NN 70-40% JASPAR ATTGTTA 53.4% identity Open · Scan
MA0515.1 NN 70-40% JASPAR CCATTGTTTT 53.4% identity Open · Scan
MA1120.1 NN 70-40% JASPAR AAACAATGGCA 53.4% identity Open · Scan
M03974_2.00 NN 70-40% CisBP AACAATAACATTGTT 52.8% identity Open · Scan
MA0870.1 NN 70-40% JASPAR AACAATAACATTGTT 52.6% identity Open · Scan
M00204_2.00 NN 70-40% CisBP AAAACAAT 52.0% identity Open · Scan
MA1563.1 NN 70-40% JASPAR CACAATGC 52.0% identity Open · Scan
M05769_2.00 NN 70-40% CisBP CCATTGTGAG 51.1% identity Open · Scan
M00201_2.00 NN 70-40% CisBP ATTGTTCTGC 50.6% identity Open · Scan
M05754_2.00 NN 70-40% CisBP CATTGTTC 50.6% identity Open · Scan
M03538_2.00 NN 70-40% CisBP AAACAATGACATTGTTT 50.1% identity Open · Scan
MA0514.1 NN 70-40% JASPAR CCTTTGTTTT 50.1% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 317 aa
39-111

Region 39-111 0 PWM

Residues
73 aa
Domains
PF00505 · HMG (high mobility group) box PF12336 · SOX transcription factor
3D models
1 active PDB
Templates
1HRY
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 39-1111 model
Actions
Predicted = Low TFS_B2R6J0:39:111_1hry_A_1 1hry 39-111 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
41-109PF00505HMG (high mobility group) boxoverlaps 39-111
110-200PF12336SOX transcription factoroverlaps 39-111