ModCRE DB

Transcription factor

B2R755

cDNA, FLJ93291, highly similar to Homo sapiens nescient helix loop helix 2 (NHLH2), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 135 aa

23 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)5
MotifPredictionSourceDNA bindingSupportLogoActions
MA1529.1 NN 70+% JASPAR GGGCCGCAGCTGCGTCCC 99.2% identity Open · Scan
M04177_2.00 NN 70+% CisBP GGGCCGCAGCTGCGTCCC 99.0% identity Open · Scan
M00756_2.00 NN 70+% CisBP CGCAGCTGTG 97.0% identity Open · Scan
MA0048.1 NN 70+% JASPAR GCGCAGCTGCGT 96.0% identity Open · Scan
M05965_2.00 NN 70+% CisBP AAAAACACCTGCGCC 88.8% identity Open · Scan
Nearest Neighbor (70% - 40%)18
MotifPredictionSourceDNA bindingSupportLogoActions
MA0091.1 NN 70-40% JASPAR CGACCATCTGTT 64.7% identity Open · Scan
MA0140.1 NN 70-40% JASPAR CTGGTGGGGACAGATAAG 64.7% identity Open · Scan
MA0092.1 NN 70-40% JASPAR GGTCTGGCAT 60.4% identity Open · Scan
M01718_2.00 NN 70-40% CisBP AACATATGGT 59.1% identity Open · Scan
MA0633.1 NN 70-40% JASPAR ACCATATGTT 59.1% identity Open · Scan
MA1123.1 NN 70-40% JASPAR ATTCCAGATGTTT 59.1% identity Open · Scan
MA1638.1 NN 70-40% JASPAR ACCAGATGGC 59.0% identity Open · Scan
M03606_2.00 NN 70-40% CisBP CCACACGACGCA 53.3% identity Open · Scan
MA0607.1 NN 70-40% JASPAR CCATATGT 53.3% identity Open · Scan
MA1472.1 NN 70-40% JASPAR AACAGCTGTT 53.3% identity Open · Scan
M04156_2.00 NN 70-40% CisBP AACAGCTGACGC 52.9% identity Open · Scan
MA1618.1 NN 70-40% JASPAR AAACAGATGTTTA 52.9% identity Open · Scan
MA0623.2 NN 70-40% JASPAR GACATATGTC 52.3% identity Open · Scan
M05967_2.00 NN 70-40% CisBP TGACATATGG 52.0% identity Open · Scan
M06000_2.00 NN 70-40% CisBP CCAGATGGCACGGACACAACA 52.0% identity Open · Scan
MA0669.1 NN 70-40% JASPAR AACATATGTC 51.0% identity Open · Scan
M03621_2.00 NN 70-40% CisBP AAAACAGCTGTTTT 50.9% identity Open · Scan
MA1100.1 NN 70-40% JASPAR GCAGCAGCTGGCG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 135 aa
70-133

Region 70-133 0 PWM

Residues
64 aa
Domains
PF00010 · Helix-loop-helix DNA-binding domain
3D models
1 active PDB
Templates
1MDY
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 70-1331 model
Actions
Predicted = Low DIMER_B2R755:70:133_1mdy_A_1 1mdy 70-133 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
79-129PF00010Helix-loop-helix DNA-binding domainoverlaps 70-133