ModCRE DB

Transcription factor

B2R8X4

GA-binding protein alpha chain

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 454 aa

25 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
MA0062.1 NN 70+% JASPAR ACCGGAAGAG 99.7% identity Open · Scan
M00157_2.00 NN 70+% CisBP AACCGGAAGT 96.0% identity Open · Scan
MA0062.2 NN 70+% JASPAR CCGGAAGTGGC 95.4% identity Open · Scan
Nearest Neighbor (70% - 40%)22
MotifPredictionSourceDNA bindingSupportLogoActions
M03726_2.00 NN 70-40% CisBP GACCGGAAGTG 65.8% identity Open · Scan
M06188_2.00 NN 70-40% CisBP ACCGGAAAT 64.9% identity Open · Scan
MA0149.1 NN 70-40% JASPAR GGAAGGAAGGAAGGAAGG 64.6% identity Open · Scan
M01493_2.00 NN 70-40% CisBP AACCGGAAGT 64.3% identity Open · Scan
M01489_2.00 NN 70-40% CisBP AACCGGAAGT 61.7% identity Open · Scan
M03010_2.00 NN 70-40% CisBP ACCGGAAGTA 61.7% identity Open · Scan
M04733_2.00 NN 70-40% CisBP ACCGGAAGTG 61.7% identity Open · Scan
MA0759.1 NN 70-40% JASPAR ACCGGAAGTA 61.7% identity Open · Scan
MA0156.1 NN 70-40% JASPAR CAGGAAAT 61.5% identity Open · Scan
MA0028.1 NN 70-40% JASPAR GAGCCGGAAG 60.9% identity Open · Scan
M03001_2.00 NN 70-40% CisBP ACCGGAAGTG 60.4% identity Open · Scan
MA0076.1 NN 70-40% JASPAR ACCGGAAGT 60.4% identity Open · Scan
M04744_2.00 NN 70-40% CisBP AACCCGGAAGTA 58.0% identity Open · Scan
MA0765.1 NN 70-40% JASPAR ACCGGAAGTG 57.6% identity Open · Scan
MA0762.1 NN 70-40% JASPAR AACCGGAAATA 57.3% identity Open · Scan
MA0760.1 NN 70-40% JASPAR ACCGGAAGTG 56.5% identity Open · Scan
M09046_2.00 NN 70-40% CisBP GGCCGGAAGTG 56.1% identity Open · Scan
MA0761.1 NN 70-40% JASPAR ACCGGAAGTA 56.1% identity Open · Scan
MA0763.1 NN 70-40% JASPAR ACCGGAAGTG 55.9% identity Open · Scan
M09048_2.00 NN 70-40% CisBP GGAAACAGGAAGTGGG 55.1% identity Open · Scan
M04729_2.00 NN 70-40% CisBP AATCCGGAAGTA 51.2% identity Open · Scan
M06186_2.00 NN 70-40% CisBP AACAGGAAGT 50.6% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 454 aa
317-418

Region 317-418 0 PWM

Residues
102 aa
Domains
PF00178 · Ets-domain
3D models
1 active PDB
Templates
2NNY
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 317-4181 model
Actions
Predicted = Low DIMER_B2R8X4:317:418_2nny_B_1 2nny 317-418 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
37-119PF11620GA-binding protein alpha chainNo overlap with loaded model regions
171-250PF02198Sterile alpha motif (SAM)/Pointed domainNo overlap with loaded model regions
319-400PF00178Ets-domainoverlaps 317-418