ModCRE DB

Transcription factor

B2R940

Paired box protein Pax-9

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 341 aa

26 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)15
MotifPredictionSourceDNA bindingSupportLogoActions
MA0781.1 NN 70+% JASPAR CGTCACGCATGACTGCA 99.4% identity Open · Scan
M03945_2.00 NN 70+% CisBP GTCATGCGTGACG 85.9% identity Open · Scan
M00354_2.00 NN 70+% CisBP CCGATTA 75.0% identity Open · Scan
MA0780.1 NN 70+% JASPAR TAATCGATTA 75.0% identity Open · Scan
M02425_2.00 NN 70+% CisBP CAGTCAAGCG 73.8% identity Open · Scan
M05419_2.00 NN 70+% CisBP CGATTAGTCACGGTT 73.8% identity Open · Scan
M09622_2.00 NN 70+% CisBP GCAGCCAAGCGTGACC 73.8% identity Open · Scan
MA0014.1 NN 70+% JASPAR AGAGCACTGAAGCGTAACCG 73.8% identity Open · Scan
MA0014.2 NN 70+% JASPAR GAGGGCAGCCAAGCGTGAC 73.8% identity Open · Scan
MA0067.1 NN 70+% JASPAR AGTCACGC 73.8% identity Open · Scan
MA0680.1 NN 70+% JASPAR TAATCGATTA 73.8% identity Open · Scan
M03294_2.00 NN 70+% CisBP CGTCACGCTTGACTGCTC 72.5% identity Open · Scan
M05685_2.00 NN 70+% CisBP GGCGCAGTCATGCGTGACGG 72.2% identity Open · Scan
M02690_2.00 NN 70+% CisBP AGTCACGC 71.9% identity Open · Scan
M03892_2.00 NN 70+% CisBP GATAATTGATTATC 70.0% identity Open · Scan
Nearest Neighbor (70% - 40%)11
MotifPredictionSourceDNA bindingSupportLogoActions
MA0069.1 NN 70-40% JASPAR TTCACGCATGAGTT 69.7% identity Open · Scan
M03947_2.00 NN 70-40% CisBP AGCGTGACGGTTCCGCT 69.1% identity Open · Scan
M02426_2.00 NN 70-40% CisBP ACCGTGACCAC 67.4% identity Open · Scan
M06555_2.00 NN 70-40% CisBP AGTAACAGT 66.1% identity Open · Scan
M03888_2.00 NN 70-40% CisBP GCGTGACGAATC 65.8% identity Open · Scan
MA0779.1 NN 70-40% JASPAR CGTCACGCATGACTGCA 63.2% identity Open · Scan
M10806_2.00 NN 70-40% CisBP AATTTTCACGCATGAGTTCAC 62.9% identity Open · Scan
MA0068.2 NN 70-40% JASPAR CTAATTAG 60.8% identity Open · Scan
MA0068.1 NN 70-40% JASPAR GAAAAATTTCCAATACTCCACTCCCCCCCC 60.3% identity Open · Scan
M00349_2.00 NN 70-40% CisBP CTAATTAGC 53.3% identity Open · Scan
M03887_2.00 NN 70-40% CisBP GATAATCGATTATC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 341 aa
6-127

Region 6-127 0 PWM

Residues
122 aa
Domains
PF00292 · 'Paired box' domain
3D models
1 active PDB
Templates
1PDN
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 6-1271 model
Actions
Predicted = Low TFS_B2R940:6:127_1pdn_C_1 1pdn 6-127 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
6-128PF00292'Paired box' domainoverlaps 6-127