ModCRE DB

Transcription factor

B2R962

cDNA, FLJ94233, highly similar to Homo sapiens zinc finger protein 189 (ZNF189), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 612 aa

81 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M08311_2.00 NN 70+% CisBP CTGGAACAGAAGGGGCGA 99.8% identity Open · Scan
Nearest Neighbor (70% - 40%)80
MotifPredictionSourceDNA bindingSupportLogoActions
M00959_2.00 NN 70-40% CisBP GCCCTCCC 69.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 69.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 68.6% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 67.8% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 67.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 67.0% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 67.0% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 66.6% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 66.2% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 65.4% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 64.2% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 63.7% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 63.3% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 62.6% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 61.8% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 59.4% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 59.2% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 58.9% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 58.9% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 58.2% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 58.1% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 58.1% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 57.3% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 57.1% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 57.1% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 56.8% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 56.2% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 56.2% identity Open · Scan
M01442_2.00 NN 70-40% CisBP ACCCCACATT 55.9% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 55.9% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 55.6% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 55.5% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 55.2% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 54.9% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 54.8% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 54.8% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 54.4% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 54.3% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 54.2% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 54.1% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 54.1% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 54.0% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 53.8% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 53.7% identity Open · Scan
M07618_2.00 NN 70-40% CisBP CCTTTGGTGCTC 53.5% identity Open · Scan
M10391_2.00 NN 70-40% CisBP TACCCCACATTTATTTA 53.5% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 53.3% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 53.3% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 53.1% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 52.8% identity Open · Scan
M07685_2.00 NN 70-40% CisBP CTTTCCAGCCAC 52.7% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 52.7% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 52.7% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 52.6% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 52.5% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 52.3% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 52.0% identity Open · Scan
M07657_2.00 NN 70-40% CisBP CCCCTGCATGTCCCCATTTTT 51.7% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 51.6% identity Open · Scan
M07723_2.00 NN 70-40% CisBP CCGCTGCTCCCTGCT 51.6% identity Open · Scan
M00769_2.00 NN 70-40% CisBP ACTCCCCC 51.5% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 51.4% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 51.1% identity Open · Scan
M07720_2.00 NN 70-40% CisBP TGTGTGTGTGGGCATGTGTGTGTGCGAGT 51.0% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 50.9% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 50.9% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 50.6% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 50.6% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.5% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 50.5% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 50.5% identity Open · Scan
M07628_2.00 NN 70-40% CisBP AGTGGTTCTGCTTCT 50.3% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 50.1% identity Open · Scan
M00217_2.00 NN 70-40% CisBP TTACTCAATAT 50.0% identity Open · Scan
M02731_2.00 NN 70-40% CisBP CACTTTCACTTT 50.0% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 50.0% identity Open · Scan
M08320_2.00 NN 70-40% CisBP TTCCCTGCC 50.0% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 50.0% identity Open · Scan
MA0493.1 NN 70-40% JASPAR GGCCACACCCA 50.0% identity Open · Scan
MA0508.1 NN 70-40% JASPAR AGAAAGTGAAAGTGA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 612 aa
131-409

Region 131-409 0 PWM

Residues
279 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5WJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 131-4091 model
Actions
Predicted = Low TFS_B2R962:131:409_5wjq_D_1 5wjq 131-409 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
10-40PF01352KRAB boxNo overlap with loaded model regions
134-156PF00096Zinc finger, C2H2 typeoverlaps 131-409
162-184PF00096Zinc finger, C2H2 typeoverlaps 131-409
190-212PF00096Zinc finger, C2H2 typeoverlaps 131-409
218-240PF00096Zinc finger, C2H2 typeoverlaps 131-409
246-268PF00096Zinc finger, C2H2 typeoverlaps 131-409
274-296PF00096Zinc finger, C2H2 typeoverlaps 131-409
302-324PF00096Zinc finger, C2H2 typeoverlaps 131-409
332-352PF00096Zinc finger, C2H2 typeoverlaps 131-409
358-380PF00096Zinc finger, C2H2 typeoverlaps 131-409
386-408PF00096Zinc finger, C2H2 typeoverlaps 131-409
442-464PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
470-492PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
498-520PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
526-548PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
554-576PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions