ModCRE DB

Transcription factor

B2R9U5

cDNA, FLJ94560, highly similar to Homo sapiens homeo box A11 (HOXA11), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 313 aa

91 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
MA0911.1 NN 70+% JASPAR GGTCGTAAAATT 99.6% identity Open · Scan
M00474_2.00 NN 70+% CisBP TTTATGACC 96.8% identity Open · Scan
Nearest Neighbor (70% - 40%)89
MotifPredictionSourceDNA bindingSupportLogoActions
M03253_2.00 NN 70-40% CisBP TTTTTATTAC 68.8% identity Open · Scan
MA0905.1 NN 70-40% JASPAR GTCGTAAAAT 68.8% identity Open · Scan
MA0594.1 NN 70-40% JASPAR GCCATAAATCA 68.2% identity Open · Scan
MA0594.2 NN 70-40% JASPAR GTCGTAAACG 68.2% identity Open · Scan
M03775_2.00 NN 70-40% CisBP GTTTTATGTGTTTT 66.6% identity Open · Scan
MA0485.1 NN 70-40% JASPAR GGCCATAAATCAC 65.0% identity Open · Scan
MA0485.2 NN 70-40% JASPAR GTCGTAAAAT 65.0% identity Open · Scan
MA0873.1 NN 70-40% JASPAR AGTCGTAAAAA 65.0% identity Open · Scan
M05394_2.00 NN 70-40% CisBP GGTCGTAAAAC 64.2% identity Open · Scan
M09170_2.00 NN 70-40% CisBP TCATAAATCATC 64.2% identity Open · Scan
MA0899.1 NN 70-40% JASPAR GGTAATAAAAA 64.2% identity Open · Scan
M05105_2.00 NN 70-40% CisBP GTCGTAAAAT 63.4% identity Open · Scan
MA0913.1 NN 70-40% JASPAR GCAATAAAAA 63.4% identity Open · Scan
MA0913.2 NN 70-40% JASPAR GCAATAAAAC 63.4% identity Open · Scan
M02196_2.00 NN 70-40% CisBP TTAATTAC 63.3% identity Open · Scan
M00410_2.00 NN 70-40% CisBP TTTTATGACC 62.9% identity Open · Scan
MA1503.1 NN 70-40% JASPAR GTCGTAAAAT 62.9% identity Open · Scan
MA1506.1 NN 70-40% JASPAR GGTCGTAAAAC 62.8% identity Open · Scan
M00538_2.00 NN 70-40% CisBP TTTTATGACC 62.1% identity Open · Scan
M02205_2.00 NN 70-40% CisBP CATTAATTACC 62.0% identity Open · Scan
MA0907.1 NN 70-40% JASPAR GCTCGTAAAAA 60.9% identity Open · Scan
MA0909.1 NN 70-40% JASPAR CCAATAAAAA 60.0% identity Open · Scan
MA0650.1 NN 70-40% JASPAR CCAATAAAAA 59.3% identity Open · Scan
MA0132.1 NN 70-40% JASPAR CTAATT 59.2% identity Open · Scan
MA0132.2 NN 70-40% JASPAR GTAATTAG 59.2% identity Open · Scan
M00508_2.00 NN 70-40% CisBP TTTTATGACC 58.3% identity Open · Scan
MA0906.1 NN 70-40% JASPAR GGTCGTAAAAA 58.3% identity Open · Scan
M02166_2.00 NN 70-40% CisBP CTAATTAC 57.6% identity Open · Scan
M00505_2.00 NN 70-40% CisBP TTTTATGAGC 56.6% identity Open · Scan
MA0901.1 NN 70-40% JASPAR CCAATAAAAC 56.6% identity Open · Scan
MA1502.1 NN 70-40% JASPAR GCAATTAC 55.9% identity Open · Scan
M02081_2.00 NN 70-40% CisBP TTTTATTA 55.7% identity Open · Scan
MA0912.1 NN 70-40% JASPAR TTGAGTTAATTAACCT 55.5% identity Open · Scan
MA0912.2 NN 70-40% JASPAR CTAATTAC 55.5% identity Open · Scan
M05312_2.00 NN 70-40% CisBP TTAACGAC 54.2% identity Open · Scan
MA0910.1 NN 70-40% JASPAR TAAATAATTAATGGCTA 54.2% identity Open · Scan
MA0910.2 NN 70-40% JASPAR GCAATTAC 54.2% identity Open · Scan
M00391_2.00 NN 70-40% CisBP TTAATTGCC 54.0% identity Open · Scan
M10761_2.00 NN 70-40% CisBP CATAAAT 54.0% identity Open · Scan
MA0465.1 NN 70-40% JASPAR AAGCCATAAAA 54.0% identity Open · Scan
MA1505.1 NN 70-40% JASPAR GTAATTAC 54.0% identity Open · Scan
M03104_2.00 NN 70-40% CisBP TTAATTACGGTAATTAC 53.4% identity Open · Scan
M03271_2.00 NN 70-40% CisBP GTAATTAC 53.4% identity Open · Scan
M03799_2.00 NN 70-40% CisBP GTAATTAC 53.4% identity Open · Scan
MA0706.1 NN 70-40% JASPAR AGTAATTAAC 53.4% identity Open · Scan
M06929_2.00 NN 70-40% CisBP TAAATGATTAA 53.1% identity Open · Scan
M00392_2.00 NN 70-40% CisBP TTAATTAC 52.6% identity Open · Scan
M09680_2.00 NN 70-40% CisBP TTAATTA 52.6% identity Open · Scan
MA0904.1 NN 70-40% JASPAR ACGGTAATTAGCTCAT 52.6% identity Open · Scan
MA0904.2 NN 70-40% JASPAR GTAATTAC 52.6% identity Open · Scan
MA1500.1 NN 70-40% JASPAR TTAATTAC 52.6% identity Open · Scan
M09193_2.00 NN 70-40% CisBP TTTTATGGCCTT 52.4% identity Open · Scan
M05019_2.00 NN 70-40% CisBP GGTCGTAAAAC 52.0% identity Open · Scan
M09186_2.00 NN 70-40% CisBP ACATAAAT 52.0% identity Open · Scan
MA0878.1 NN 70-40% JASPAR GCAATAAAA 52.0% identity Open · Scan
M00532_2.00 NN 70-40% CisBP TTAATGACC 51.7% identity Open · Scan
M01245_2.00 NN 70-40% CisBP TTTTATTACC 51.7% identity Open · Scan
M06248_2.00 NN 70-40% CisBP TAATTGCC 51.7% identity Open · Scan
M00422_2.00 NN 70-40% CisBP TTAATGA 50.8% identity Open · Scan
M06224_2.00 NN 70-40% CisBP ATCATAAAA 50.8% identity Open · Scan
M06545_2.00 NN 70-40% CisBP TTAATTA 50.8% identity Open · Scan
M06548_2.00 NN 70-40% CisBP TTAATTG 50.8% identity Open · Scan
MA0902.1 NN 70-40% JASPAR AGTAATTAAC 50.8% identity Open · Scan
MA1473.1 NN 70-40% JASPAR GGCAATAAAAC 50.8% identity Open · Scan
MA1496.1 NN 70-40% JASPAR GTCATTAG 50.8% identity Open · Scan
M00494_2.00 NN 70-40% CisBP TTAATTACC 50.7% identity Open · Scan
M06549_2.00 NN 70-40% CisBP TTAATGA 50.7% identity Open · Scan
MA0651.1 NN 70-40% JASPAR GGTCGTAAAAT 50.7% identity Open · Scan
MA1497.1 NN 70-40% JASPAR GGTAATTAAC 50.7% identity Open · Scan
MA1498.1 NN 70-40% JASPAR GCAATTAC 50.7% identity Open · Scan
M00403_2.00 NN 70-40% CisBP CTAATTACC 50.0% identity Open · Scan
M00469_2.00 NN 70-40% CisBP TTAATTACC 50.0% identity Open · Scan
M02046_2.00 NN 70-40% CisBP TCATTAATTAT 50.0% identity Open · Scan
M02062_2.00 NN 70-40% CisBP TTAATGGGCT 50.0% identity Open · Scan
M02211_2.00 NN 70-40% CisBP TTAATTAC 50.0% identity Open · Scan
M04959_2.00 NN 70-40% CisBP GTAATTAC 50.0% identity Open · Scan
M05272_2.00 NN 70-40% CisBP TTAACGAG 50.0% identity Open · Scan
M06261_2.00 NN 70-40% CisBP TTAATTA 50.0% identity Open · Scan
M06489_2.00 NN 70-40% CisBP TTAATTA 50.0% identity Open · Scan
M08573_2.00 NN 70-40% CisBP AGTAATTA 50.0% identity Open · Scan
M09139_2.00 NN 70-40% CisBP ATTTGCATAACAAAGGA 50.0% identity Open · Scan
M09196_2.00 NN 70-40% CisBP TTGATGGATG 50.0% identity Open · Scan
M09206_2.00 NN 70-40% CisBP CATTAATCAA 50.0% identity Open · Scan
M09582_2.00 NN 70-40% CisBP ATGATTGATG 50.0% identity Open · Scan
MA0893.1 NN 70-40% JASPAR ACTAATTAAA 50.0% identity Open · Scan
MA0900.1 NN 70-40% JASPAR CCTAATTACC 50.0% identity Open · Scan
MA0903.1 NN 70-40% JASPAR ACTAATTAGC 50.0% identity Open · Scan
MA1495.1 NN 70-40% JASPAR GTAATTAC 50.0% identity Open · Scan
MA1501.1 NN 70-40% JASPAR GGTAATTAAC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 313 aa
242-298

Region 242-298 0 PWM

Residues
57 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5ZJR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 242-2981 model
Actions
Predicted = Low DIMER_B2R9U5:242:298_5zjr_A_1 5zjr 242-298 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
25-152PF12045Protein of unknown function (DUF3528)No overlap with loaded model regions
242-298PF00046Homeodomainoverlaps 242-298