ModCRE DB

Transcription factor

B2RAP3

cDNA, FLJ95034, highly similar to Homo sapiens neurogenin 1 (NEUROG1), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 237 aa

23 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
MA0623.2 NN 70+% JASPAR GACATATGTC 99.5% identity Open · Scan
MA0623.1 NN 70+% JASPAR ACCATATGGT 87.7% identity Open · Scan
MA0669.1 NN 70+% JASPAR AACATATGTC 77.4% identity Open · Scan
MA0668.1 NN 70+% JASPAR GCCATATGGT 70.1% identity Open · Scan
Nearest Neighbor (70% - 40%)19
MotifPredictionSourceDNA bindingSupportLogoActions
M05967_2.00 NN 70-40% CisBP TGACATATGG 64.7% identity Open · Scan
MA1109.1 NN 70-40% JASPAR GGACAGATGGCAG 55.2% identity Open · Scan
M05986_2.00 NN 70-40% CisBP ACCGCACCATCTGTC 53.9% identity Open · Scan
M05976_2.00 NN 70-40% CisBP ACCATATGGCG 53.0% identity Open · Scan
MA0607.1 NN 70-40% JASPAR CCATATGT 53.0% identity Open · Scan
MA1472.1 NN 70-40% JASPAR AACAGCTGTT 53.0% identity Open · Scan
M01729_2.00 NN 70-40% CisBP AACATATGGT 52.6% identity Open · Scan
MA0678.1 NN 70-40% JASPAR ACCATATGGT 52.6% identity Open · Scan
MA0818.1 NN 70-40% JASPAR ACCATATGTT 52.6% identity Open · Scan
MA0827.1 NN 70-40% JASPAR ACCATATGTT 52.6% identity Open · Scan
M05962_2.00 NN 70-40% CisBP CCACCTGCC 52.4% identity Open · Scan
MA1485.1 NN 70-40% JASPAR GCAACAGCTGTTAC 51.9% identity Open · Scan
M05952_2.00 NN 70-40% CisBP ACCATCTGCCG 51.7% identity Open · Scan
M05980_2.00 NN 70-40% CisBP CACAGCTGAC 51.6% identity Open · Scan
M03621_2.00 NN 70-40% CisBP AAAACAGCTGTTTT 51.5% identity Open · Scan
MA1468.1 NN 70-40% JASPAR AACATATGTC 50.8% identity Open · Scan
MA0832.1 NN 70-40% JASPAR GCAACAGCTGTTGT 50.0% identity Open · Scan
MA1123.1 NN 70-40% JASPAR ATTCCAGATGTTT 50.0% identity Open · Scan
MA1568.1 NN 70-40% JASPAR CACCATATGGCG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 237 aa
92-149

Region 92-149 0 PWM

Residues
58 aa
Domains
PF00010 · Helix-loop-helix DNA-binding domain
3D models
1 active PDB
Templates
2QL2
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 92-1491 model
Actions
Predicted = Low DIMER_B2RAP3:92:149_2ql2_B_1 2ql2 92-149 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
93-142PF00010Helix-loop-helix DNA-binding domainoverlaps 92-149