ModCRE DB

Transcription factor

B2RB98

cDNA, FLJ95384, highly similar to Homo sapiens zinc finger protein 317 (ZNF317), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 595 aa

26 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
MA1593.1 NN 70+% JASPAR TAACAGCAGACT 99.8% identity Open · Scan
Nearest Neighbor (70% - 40%)25
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 60.7% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 55.9% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 55.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 55.2% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 55.2% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 55.2% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 55.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 54.1% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 54.1% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 54.1% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 54.0% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 53.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 53.0% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 52.1% identity Open · Scan
M03702_2.00 NN 70-40% CisBP GACCCCCCACGACGC 51.2% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 51.0% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 50.6% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 50.6% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 50.6% identity Open · Scan
M03710_2.00 NN 70-40% CisBP CTCACGCCCCCC 50.5% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 50.4% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 50.2% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 50.1% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 50.0% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 595 aa
222-384

Region 222-384 0 PWM

Residues
163 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5T0U
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 222-3841 model
Actions
Predicted = Low TFS_B2RB98:222:384_5t0u_A_1 5t0u 222-384 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
56-97PF01352KRAB boxNo overlap with loaded model regions
222-244PF00096Zinc finger, C2H2 typeoverlaps 222-384
250-272PF00096Zinc finger, C2H2 typeoverlaps 222-384
278-300PF00096Zinc finger, C2H2 typeoverlaps 222-384
306-328PF00096Zinc finger, C2H2 typeoverlaps 222-384
334-356PF00096Zinc finger, C2H2 typeoverlaps 222-384
362-384PF00096Zinc finger, C2H2 typeoverlaps 222-384
390-412PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
419-440PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
448-468PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
503-524PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
530-552PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
558-580PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions