ModCRE DB

Transcription factor

B3KNB1

cDNA FLJ14160 fis, clone NT2RM2001797, highly similar to Homo sapiens zinc finger protein 658 (ZNF658), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 569 aa

127 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)123
MotifPredictionSourceDNA bindingSupportLogoActions
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 69.3% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 67.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 65.8% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 64.7% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 63.5% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 63.5% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 63.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 63.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 62.3% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 62.3% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 62.2% identity Open · Scan
M08365_2.00 NN 70-40% CisBP GCCAGCAGCCATCAG 62.1% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 62.0% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.9% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 61.4% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 61.2% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 61.1% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 60.8% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 60.4% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 60.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.0% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 59.9% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 59.6% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 59.4% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 59.1% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 59.0% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 59.0% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 58.9% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 58.9% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 58.7% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 58.5% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 58.5% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 58.1% identity Open · Scan
M05847_2.00 NN 70-40% CisBP AGACCTACTATGC 58.0% identity Open · Scan
MA1585.1 NN 70-40% JASPAR ATAGTAGGTG 58.0% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 57.6% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 57.5% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 57.4% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 57.3% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 57.2% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 56.8% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 56.8% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 56.6% identity Open · Scan
M07659_2.00 NN 70-40% CisBP GTCTTCCAAGTAGCTGGTGTT 56.6% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 56.5% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 56.0% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 55.8% identity Open · Scan
M08234_2.00 NN 70-40% CisBP GTCAACTTGACTGGGCCA 55.8% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 55.8% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 55.8% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 55.7% identity Open · Scan
M00134_2.00 NN 70-40% CisBP GCCACGCCCA 55.5% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 55.4% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 55.4% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 55.3% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.1% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 55.0% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 54.8% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 54.8% identity Open · Scan
MA0130.1 NN 70-40% JASPAR ATCCAC 54.8% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 54.8% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 54.6% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 54.5% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 54.2% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 54.2% identity Open · Scan
M08903_2.00 NN 70-40% CisBP ATTCCATTCTATTCCATTCT 54.2% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 54.1% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 54.0% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 54.0% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 53.8% identity Open · Scan
MA1514.1 NN 70-40% JASPAR CACCACGCACCCCTT 53.8% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 53.5% identity Open · Scan
M07740_2.00 NN 70-40% CisBP TCCTGATTCCACACTCAAACATAACTTT 53.4% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 53.3% identity Open · Scan
M07725_2.00 NN 70-40% CisBP AAGCACTGTACT 53.3% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 53.2% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 53.2% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 53.2% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 53.1% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 53.1% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 52.9% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 52.7% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 52.5% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 52.5% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 52.4% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 52.0% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.9% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 51.7% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 51.7% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 51.7% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 51.7% identity Open · Scan
M00774_2.00 NN 70-40% CisBP TTAGTATACACAAGT 51.6% identity Open · Scan
M04480_2.00 NN 70-40% CisBP ATTGATTACCCACCCTAC 51.6% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 51.6% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 51.6% identity Open · Scan
M07666_2.00 NN 70-40% CisBP ATCTAGCCCCTGCCTACC 51.6% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 51.6% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 51.6% identity Open · Scan
M07723_2.00 NN 70-40% CisBP CCGCTGCTCCCTGCT 51.5% identity Open · Scan
M00217_2.00 NN 70-40% CisBP TTACTCAATAT 51.4% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 51.2% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 51.2% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 51.2% identity Open · Scan
M07720_2.00 NN 70-40% CisBP TGTGTGTGTGGGCATGTGTGTGTGCGAGT 51.0% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 50.7% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 50.7% identity Open · Scan
M08390_2.00 NN 70-40% CisBP GCTTTGTTGACTCAC 50.7% identity Open · Scan
MA1597.1 NN 70-40% JASPAR CCCAGGGAAGCCATTTC 50.7% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 50.6% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 50.5% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 50.3% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 50.2% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 50.1% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 50.1% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 50.1% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 50.1% identity Open · Scan
M00777_2.00 NN 70-40% CisBP ACCGTTAT 50.0% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.0% identity Open · Scan
M05855_2.00 NN 70-40% CisBP GTATTATACCCAGCT 50.0% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 50.0% identity Open · Scan
M07691_2.00 NN 70-40% CisBP CCTGCAGCCACCTTGGCCTTG 50.0% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 50.0% identity Open · Scan
MA1107.1 NN 70-40% JASPAR GGCCACACCCACC 50.0% identity Open · Scan
ModCRE4
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B3KNB1_B3KNB1_HUMAN:109:387_5wjq_D_1 ModCRE Homology model CCCGGGGGGGACAGGTGGGGGGGGCCGC Region 109-387 · 1 3D model Open · Scan
TFS_tr_B3KNB1_B3KNB1_HUMAN:401:550_2i13_A_1 ModCRE Homology model AGCCCTACAGCTCTGCTTAAT Region 401-550 · 1 3D model Open · Scan
TFS_tr_B3KNB1_B3KNB1_HUMAN:83:359_5v3j_E_1 ModCRE Homology model CGCCCGCCCCGAGGGAGGTGGGCCCC Region 83-359 · 1 3D model Open · Scan
TFS_tr_B3KNB1_B3KNB1_HUMAN:83:359_5v3m_C_1 ModCRE Homology model CGGCCGGGGGGGTCGGGGTGGGGCCT Region 83-359 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 569 aa
56-387
401-550

Region 56-387 3 PWM

Residues
332 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
4 active PDBs · 4 summary rows
Templates
5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models

Region 401-550 1 PWM

Residues
150 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
2 active PDBs · 2 summary rows
Templates
1LLM, 2I13
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 56-3874 models · 4 summary rows
Actions
Predicted = Low TFS_tr_B3KNB1_B3KNB1_HUMAN:109:387_5wjq_D_1 5wjq 109-387 View model · PDB
Predicted = Low TFS_tr_B3KNB1_B3KNB1_HUMAN:56:354_7w1m_H_1 7w1m 56-354 View model · PDB
Predicted = Low TFS_tr_B3KNB1_B3KNB1_HUMAN:83:359_5v3j_E_1 5v3j 83-359 View model · PDB
Predicted = Low TFS_tr_B3KNB1_B3KNB1_HUMAN:83:359_5v3m_C_1 5v3m 83-359 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 5wjq 11:556 109 387 P:D · DNA:A,B 50.9% / 70.3% 99 View · PDB TFS_tr_B3KNB1_B3KNB1_HUMAN:109:387_5wjq_D_1
2 5v3m 11:556 83 359 P:C · DNA:A,B 49.8% / 70.8% 100 View · PDB TFS_tr_B3KNB1_B3KNB1_HUMAN:83:359_5v3m_C_1
3 5v3j 11:556 83 359 P:E · DNA:A,B 49.8% / 70.8% 100 View · PDB TFS_tr_B3KNB1_B3KNB1_HUMAN:83:359_5v3j_E_1
5 7w1m 11:556 56 354 P:H · DNA:F,G 34.7% / 54.2% 92 View · PDB TFS_tr_B3KNB1_B3KNB1_HUMAN:56:354_7w1m_H_1
Region 401-5502 models · 2 summary rows
Actions
Predicted = Low DIMER_tr_B3KNB1_B3KNB1_HUMAN:418:469_1llm_C_1 1llm 418-469 View model · PDB
Predicted = Low TFS_tr_B3KNB1_B3KNB1_HUMAN:401:550_2i13_A_1 2i13 401-550 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 11:556 401 550 P:A · DNA:C,D 61.3% / 74.7% 97 View · PDB TFS_tr_B3KNB1_B3KNB1_HUMAN:401:550_2i13_A_1
1 1llm 11:556 418,418 469,469 P:C,D · DNA:A,B 40.4% / 65.4% 59,61 View · PDB DIMER_tr_B3KNB1_B3KNB1_HUMAN:418:469_1llm_C_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
28-50PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
56-78PF00096Zinc finger, C2H2 typeoverlaps 56-387
84-106PF00096Zinc finger, C2H2 typeoverlaps 56-387
112-134PF00096Zinc finger, C2H2 typeoverlaps 56-387
140-162PF00096Zinc finger, C2H2 typeoverlaps 56-387
168-190PF00096Zinc finger, C2H2 typeoverlaps 56-387
196-218PF00096Zinc finger, C2H2 typeoverlaps 56-387
224-246PF00096Zinc finger, C2H2 typeoverlaps 56-387
252-274PF00096Zinc finger, C2H2 typeoverlaps 56-387
280-302PF00096Zinc finger, C2H2 typeoverlaps 56-387
308-330PF00096Zinc finger, C2H2 typeoverlaps 56-387
336-358PF00096Zinc finger, C2H2 typeoverlaps 56-387
364-386PF00096Zinc finger, C2H2 typeoverlaps 56-387
392-413PF00096Zinc finger, C2H2 typeoverlaps 401-550
420-442PF00096Zinc finger, C2H2 typeoverlaps 401-550
448-470PF00096Zinc finger, C2H2 typeoverlaps 401-550
476-498PF00096Zinc finger, C2H2 typeoverlaps 401-550
504-526PF00096Zinc finger, C2H2 typeoverlaps 401-550
532-555PF00096Zinc finger, C2H2 typeoverlaps 401-550