ModCRE DB

Transcription factor

B3KNK7

cDNA FLJ14806 fis, clone NT2RP4001753, highly similar to Zinc finger protein 268

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 730 aa

99 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)93
MotifPredictionSourceDNA bindingSupportLogoActions
M00953_2.00 NN 70-40% CisBP ATCTATAT 67.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 64.7% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 63.5% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 62.6% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 62.3% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 62.3% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 61.3% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.2% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 61.1% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 61.1% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 61.1% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 61.1% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 61.1% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 60.9% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 60.5% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 60.1% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 60.1% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 60.0% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 59.6% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 59.1% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 59.1% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 58.8% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 58.6% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 57.7% identity Open · Scan
M08365_2.00 NN 70-40% CisBP GCCAGCAGCCATCAG 57.4% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 57.4% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 57.3% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 57.1% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 56.9% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 56.8% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 56.3% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 56.1% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 55.9% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 55.8% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 55.7% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 55.6% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 55.3% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 54.9% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 54.7% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 54.6% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 54.4% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 54.1% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 54.0% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 54.0% identity Open · Scan
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 53.9% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 53.9% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 53.8% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 53.5% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 53.5% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 53.5% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 53.3% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 53.2% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 53.1% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 53.1% identity Open · Scan
MA1592.1 NN 70-40% JASPAR GGTATGAGTTCTCGCT 53.1% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 53.0% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 53.0% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 52.9% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 52.9% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 52.8% identity Open · Scan
M07645_2.00 NN 70-40% CisBP CTCCTT 52.5% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 52.4% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 52.4% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 52.3% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 52.1% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 51.9% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 51.8% identity Open · Scan
M06084_2.00 NN 70-40% CisBP AGACCACCCAC 51.6% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 51.6% identity Open · Scan
M08390_2.00 NN 70-40% CisBP GCTTTGTTGACTCAC 51.4% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 51.3% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 51.3% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 51.2% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 51.2% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.2% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 51.0% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 51.0% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 51.0% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 50.9% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 50.9% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.9% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 50.9% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 50.7% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 50.7% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 50.7% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.6% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 50.4% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 50.3% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 50.2% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 50.0% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 50.0% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 50.0% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B3KNK7_B3KNK7_HUMAN:449:500_1llm_C_1 ModCRE Homology model GTCCGCGCGCGA Region 449-500 · 1 3D model Open · Scan
TFS_tr_B3KNK7_B3KNK7_HUMAN:337:613_5wjq_D_1 ModCRE Homology model GCGTACCCACGCCCCCCCCGAGGCCCCC Region 337-613 · 1 3D model Open · Scan
TFS_tr_B3KNK7_B3KNK7_HUMAN:368:665_7w1m_H_1 ModCRE Homology model TTGGGGGCCGAAGCAGAACGCGCCTCAGCTGCGGGCGGCCCTC Region 368-665 · 1 3D model Open · Scan
TFS_tr_B3KNK7_B3KNK7_HUMAN:394:669_5v3j_E_1 ModCRE Homology model GCTCCCCCCCTCCTCCCTCCCGGGCC Region 394-669 · 1 3D model Open · Scan
TFS_tr_B3KNK7_B3KNK7_HUMAN:394:669_5v3m_C_1 ModCRE Homology model CCCCACCCCCACCCCCGGGACCCCCT Region 394-669 · 1 3D model Open · Scan
TFS_tr_B3KNK7_B3KNK7_HUMAN:516:669_2i13_A_1 ModCRE Homology model ACACAGAGCCTCCCTCTTGAG Region 516-669 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 730 aa
337-669

Region 337-669 6 PWM

Residues
333 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF23561 · C2H2 zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 337-6696 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B3KNK7_B3KNK7_HUMAN:449:500_1llm_C_1 1llm 449-500 View model · PDB
Predicted = Low TFS_tr_B3KNK7_B3KNK7_HUMAN:337:613_5wjq_D_1 5wjq 337-613 View model · PDB
Predicted = Low TFS_tr_B3KNK7_B3KNK7_HUMAN:368:665_7w1m_H_1 7w1m 368-665 View model · PDB
Predicted = Low TFS_tr_B3KNK7_B3KNK7_HUMAN:394:669_5v3j_E_1 5v3j 394-669 View model · PDB
Predicted = Low TFS_tr_B3KNK7_B3KNK7_HUMAN:394:669_5v3m_C_1 5v3m 394-669 View model · PDB
Predicted = Low TFS_tr_B3KNK7_B3KNK7_HUMAN:516:669_2i13_A_1 2i13 516-669 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 288:725 516 669 P:A · DNA:C,D 59.1% / 69.5% 100 View · PDB TFS_tr_B3KNK7_B3KNK7_HUMAN:516:669_2i13_A_1
1 5wjq 288:725 337 613 P:D · DNA:A,B 54.5% / 67.1% 98 View · PDB TFS_tr_B3KNK7_B3KNK7_HUMAN:337:613_5wjq_D_1
2 5v3m 288:725 394 669 P:C · DNA:A,B 54.0% / 67.4% 99 View · PDB TFS_tr_B3KNK7_B3KNK7_HUMAN:394:669_5v3m_C_1
3 5v3j 288:725 394 669 P:E · DNA:A,B 54.0% / 67.4% 99 View · PDB TFS_tr_B3KNK7_B3KNK7_HUMAN:394:669_5v3j_E_1
1 1llm 288:725 449,449 500,500 P:C,D · DNA:A,B 40.4% / 61.5% 59,61 View · PDB DIMER_tr_B3KNK7_B3KNK7_HUMAN:449:500_1llm_C_1
5 7w1m 288:725 368 665 P:H · DNA:F,G 35.5% / 50.5% 92 View · PDB TFS_tr_B3KNK7_B3KNK7_HUMAN:368:665_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
145-165PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
171-193PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
199-221PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
227-249PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
255-277PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
283-305PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
315-333PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
339-361PF00096Zinc finger, C2H2 typeoverlaps 337-669
367-389PF00096Zinc finger, C2H2 typeoverlaps 337-669
395-417PF00096Zinc finger, C2H2 typeoverlaps 337-669
423-445PF00096Zinc finger, C2H2 typeoverlaps 337-669
451-473PF00096Zinc finger, C2H2 typeoverlaps 337-669
479-501PF00096Zinc finger, C2H2 typeoverlaps 337-669
509-529PF00096Zinc finger, C2H2 typeoverlaps 337-669
536-561PF23561C2H2 zinc fingeroverlaps 337-669
563-585PF00096Zinc finger, C2H2 typeoverlaps 337-669
591-613PF00096Zinc finger, C2H2 typeoverlaps 337-669
621-641PF00096Zinc finger, C2H2 typeoverlaps 337-669
647-669PF00096Zinc finger, C2H2 typeoverlaps 337-669
675-697PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
703-725PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions