ModCRE DB

Transcription factor

B3KNP9

Zinc finger protein with KRAB and SCAN domains 1

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 527 aa

133 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
M05847_2.00 NN 70+% CisBP AGACCTACTATGC 99.6% identity Open · Scan
MA1585.1 NN 70+% JASPAR ATAGTAGGTG 99.6% identity Open · Scan
M08985_2.00 NN 70+% CisBP TGAGGACCTACTGTGTGCC 77.0% identity Open · Scan
M00939_2.00 NN 70+% CisBP CCACCTCA 70.5% identity Open · Scan
Nearest Neighbor (70% - 40%)129
MotifPredictionSourceDNA bindingSupportLogoActions
M00943_2.00 NN 70-40% CisBP CCCGCTGC 67.0% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 67.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 67.0% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 66.6% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 65.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 65.8% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 64.7% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 64.7% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 64.0% identity Open · Scan
MA1654.1 NN 70-40% JASPAR AATAGGGAGCCATGGAAGGTTTT 63.8% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 63.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 63.5% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 63.0% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 62.9% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 62.8% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 62.2% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 61.8% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 60.9% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 60.9% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 60.9% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 60.8% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 60.8% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 60.8% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 60.7% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 60.6% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 60.5% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 60.4% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 60.0% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 59.8% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 59.8% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 59.6% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 59.6% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 59.3% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 59.3% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 59.3% identity Open · Scan
M02913_2.00 NN 70-40% CisBP TTCGTGGCATTTTTCTA 59.2% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 59.2% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 59.1% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 58.8% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 58.7% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 58.6% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 58.5% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 58.3% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 58.3% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 58.3% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 58.1% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 57.8% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 57.8% identity Open · Scan
M07567_2.00 NN 70-40% CisBP CCACTCCACTCA 57.7% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 57.6% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 57.6% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 57.2% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 57.1% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 56.9% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 56.8% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 56.7% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 56.6% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 56.6% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 56.3% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 56.2% identity Open · Scan
M07595_2.00 NN 70-40% CisBP GCCTGTTCCTCTCCC 56.1% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 56.0% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 56.0% identity Open · Scan
M07740_2.00 NN 70-40% CisBP TCCTGATTCCACACTCAAACATAACTTT 56.0% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 56.0% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 56.0% identity Open · Scan
MA1597.1 NN 70-40% JASPAR CCCAGGGAAGCCATTTC 56.0% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 55.8% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 55.8% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 55.7% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 55.7% identity Open · Scan
M08386_2.00 NN 70-40% CisBP GCCTTAAAAGCTCAGCAC 55.7% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 55.7% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 55.5% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 55.3% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 55.2% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 55.1% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 55.0% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 55.0% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 55.0% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 54.8% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 54.8% identity Open · Scan
M08914_2.00 NN 70-40% CisBP ATTTAGTCCATTTACATTTAATGT 54.7% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 54.5% identity Open · Scan
M00769_2.00 NN 70-40% CisBP ACTCCCCC 54.4% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 54.2% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 54.2% identity Open · Scan
M07691_2.00 NN 70-40% CisBP CCTGCAGCCACCTTGGCCTTG 54.1% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.0% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 53.9% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 53.9% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 53.9% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 53.8% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 53.4% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 53.3% identity Open · Scan
M08300_2.00 NN 70-40% CisBP CTGCCCAATTCAT 53.3% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 53.1% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 53.0% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 52.9% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 52.9% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 52.7% identity Open · Scan
MA1599.1 NN 70-40% JASPAR CGGGCCAAGCCCCTAT 52.7% identity Open · Scan
M08234_2.00 NN 70-40% CisBP GTCAACTTGACTGGGCCA 52.3% identity Open · Scan
M07715_2.00 NN 70-40% CisBP CCGCCGCCGCCGTGG 52.1% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 52.0% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 52.0% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 52.0% identity Open · Scan
M04483_2.00 NN 70-40% CisBP ATGCACACACTGAAAAA 51.5% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 51.5% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 51.5% identity Open · Scan
M07703_2.00 NN 70-40% CisBP CCGACGG 51.4% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 51.3% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 51.2% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 51.1% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 51.0% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 50.9% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.8% identity Open · Scan
M00217_2.00 NN 70-40% CisBP TTACTCAATAT 50.7% identity Open · Scan
M08381_2.00 NN 70-40% CisBP ACATTTTGTCCTCCTAGTCCT 50.6% identity Open · Scan
M07631_2.00 NN 70-40% CisBP AATTTCAAAAATGCTATGGGC 50.5% identity Open · Scan
MA0748.1 NN 70-40% JASPAR GTCCGCCATTA 50.5% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 50.5% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 50.4% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 50.2% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.0% identity Open · Scan
M03702_2.00 NN 70-40% CisBP GACCCCCCACGACGC 50.0% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 50.0% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 50.0% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 527 aa
316-503

Region 316-503 0 PWM

Residues
188 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5WJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 316-5031 model
Actions
Predicted = Low TFS_B3KNP9:316:503_5wjq_D_1 5wjq 316-503 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
16-102PF02023SCAN domainNo overlap with loaded model regions
191-226PF01352KRAB boxNo overlap with loaded model regions
341-363PF00096Zinc finger, C2H2 typeoverlaps 316-503
369-391PF00096Zinc finger, C2H2 typeoverlaps 316-503
397-419PF00096Zinc finger, C2H2 typeoverlaps 316-503
425-447PF00096Zinc finger, C2H2 typeoverlaps 316-503
453-475PF00096Zinc finger, C2H2 typeoverlaps 316-503
481-503PF00096Zinc finger, C2H2 typeoverlaps 316-503