ModCRE DB

Transcription factor

B3KPD8

cDNA FLJ31654 fis, clone NT2RI2004230, highly similar to Homeobox protein Meis2

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 388 aa

21 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)4
MotifPredictionSourceDNA bindingSupportLogoActions
MA0774.1 NN 70+% JASPAR TTGACAGC 99.7% identity Open · Scan
MA0498.1 NN 70+% JASPAR AGCTGTCACTCACCT 83.7% identity Open · Scan
MA0498.2 NN 70+% JASPAR TTGACAG 83.7% identity Open · Scan
M03165_2.00 NN 70+% CisBP TTGACAG 83.2% identity Open · Scan
Nearest Neighbor (70% - 40%)17
MotifPredictionSourceDNA bindingSupportLogoActions
M04951_2.00 NN 70-40% CisBP TGACAGCTGTCA 69.8% identity Open · Scan
MA0775.1 NN 70-40% JASPAR TTGACAGG 69.8% identity Open · Scan
M06335_2.00 NN 70-40% CisBP ATGATACC 55.5% identity Open · Scan
M02161_2.00 NN 70-40% CisBP TGACATGT 53.4% identity Open · Scan
M02168_2.00 NN 70-40% CisBP TTGACATGT 53.3% identity Open · Scan
M02057_2.00 NN 70-40% CisBP ATTGACACGT 52.9% identity Open · Scan
M06490_2.00 NN 70-40% CisBP TGACAG 52.9% identity Open · Scan
M02054_2.00 NN 70-40% CisBP CATCTCAATCA 51.6% identity Open · Scan
M08208_2.00 NN 70-40% CisBP GAGTTGTAGT 51.6% identity Open · Scan
M08574_2.00 NN 70-40% CisBP TTTGACAG 50.9% identity Open · Scan
M00276_2.00 NN 70-40% CisBP ACTAATTAATT 50.8% identity Open · Scan
M03859_2.00 NN 70-40% CisBP TGACAG 50.7% identity Open · Scan
M06346_2.00 NN 70-40% CisBP TTGACA 50.7% identity Open · Scan
M00461_2.00 NN 70-40% CisBP ATGATACCC 50.0% identity Open · Scan
M02064_2.00 NN 70-40% CisBP ATTACAAG 50.0% identity Open · Scan
M04940_2.00 NN 70-40% CisBP CCGTATCATT 50.0% identity Open · Scan
M08422_2.00 NN 70-40% CisBP ACACAAT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 388 aa
263-326

Region 263-326 0 PWM

Residues
64 aa
Domains
PF05920 · Homeobox KN domain
3D models
1 active PDB
Templates
6FQP
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 263-3261 model
Actions
Predicted = Low DIMER_B3KPD8:263:326_6fqp_B_1 6fqp 263-326 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
60-173PF16493TALE/MEIS homeobox family N-terminal domainNo overlap with loaded model regions
281-320PF05920Homeobox KN domainoverlaps 263-326