ModCRE DB

Transcription factor

B3KPY4

cDNA FLJ32468 fis, clone SKNMC2000224, highly similar to Homo sapiens zinc finger protein 498 (ZNF498), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 380 aa

118 Generated PWM 8 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)113
MotifPredictionSourceDNA bindingSupportLogoActions
M00952_2.00 NN 70-40% CisBP GGATGCTC 67.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 67.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 65.9% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 65.8% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 64.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 64.7% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 63.6% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 62.6% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 61.4% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 60.5% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 59.2% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 58.9% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 58.1% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 57.5% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 57.5% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 57.5% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 57.0% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 57.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 56.9% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 56.9% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 56.7% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 56.7% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 56.5% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 56.2% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 56.2% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 56.0% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 56.0% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 55.8% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 55.4% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 55.3% identity Open · Scan
M07754_2.00 NN 70-40% CisBP CGCCCCCTCCCT 54.9% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 54.9% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 54.7% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 54.5% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 54.5% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 54.5% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 54.4% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 54.2% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 54.1% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 53.9% identity Open · Scan
M07725_2.00 NN 70-40% CisBP AAGCACTGTACT 53.8% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 53.5% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 53.5% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 53.4% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 53.4% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 53.4% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 53.3% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 53.3% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 53.1% identity Open · Scan
M07618_2.00 NN 70-40% CisBP CCTTTGGTGCTC 53.1% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 53.1% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 52.8% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 52.8% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 52.8% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 52.8% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 52.7% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 52.6% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 52.6% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 52.6% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 52.5% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 52.5% identity Open · Scan
M08358_2.00 NN 70-40% CisBP CCCTCCCCCTCC 52.4% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 52.3% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 52.3% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 52.2% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 52.2% identity Open · Scan
M08386_2.00 NN 70-40% CisBP GCCTTAAAAGCTCAGCAC 52.2% identity Open · Scan
M04430_2.00 NN 70-40% CisBP GACCACGCCCA 51.9% identity Open · Scan
MA0742.1 NN 70-40% JASPAR GACCACGCCCTTATT 51.9% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 51.8% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 51.8% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 51.7% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 51.7% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 51.6% identity Open · Scan
M08330_2.00 NN 70-40% CisBP TGGGTGCCGGACTGCTGTTCC 51.6% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 51.6% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 51.5% identity Open · Scan
M07701_2.00 NN 70-40% CisBP CCTGGGCTAGGCCCTGGC 51.5% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 51.5% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 51.3% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 51.3% identity Open · Scan
M07662_2.00 NN 70-40% CisBP CCTGTGTCCTCCCTGGTCCCC 51.2% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 51.1% identity Open · Scan
M07633_2.00 NN 70-40% CisBP CTCTCGTTGTGCCTTTGCCAT 51.1% identity Open · Scan
M08390_2.00 NN 70-40% CisBP GCTTTGTTGACTCAC 51.1% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 51.0% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.0% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 50.9% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 50.9% identity Open · Scan
MA1597.1 NN 70-40% JASPAR CCCAGGGAAGCCATTTC 50.9% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 50.9% identity Open · Scan
M00146_2.00 NN 70-40% CisBP TGTTCTAGAT 50.8% identity Open · Scan
M01442_2.00 NN 70-40% CisBP ACCCCACATT 50.8% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 50.7% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 50.7% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 50.7% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 50.7% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 50.7% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 50.7% identity Open · Scan
M00779_2.00 NN 70-40% CisBP GCCACGCCCA 50.6% identity Open · Scan
M08867_2.00 NN 70-40% CisBP CACCCCCTG 50.6% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 50.5% identity Open · Scan
M07645_2.00 NN 70-40% CisBP CTCCTT 50.4% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 50.2% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 50.2% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 50.2% identity Open · Scan
M00019_2.00 NN 70-40% CisBP ACCCCTAATT 50.0% identity Open · Scan
M01531_2.00 NN 70-40% CisBP CCCCCCCTAAAT 50.0% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 50.0% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.0% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 50.0% identity Open · Scan
M08525_2.00 NN 70-40% CisBP CCCCGCA 50.0% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B3KPY4_B3KPY4_HUMAN:182:377_5v3j_E_1 ModCRE Homology model CCCGGGGGGGGGTCGCCCGGAGG Region 182-377 · 1 3D model Open · Scan
TFS_tr_B3KPY4_B3KPY4_HUMAN:182:377_5v3m_C_1 ModCRE Homology model CCGGCGGGGGGGGGGCCCGGGGCC Region 182-377 · 1 3D model Open · Scan
TFS_tr_B3KPY4_B3KPY4_HUMAN:182:377_5wjq_D_1 ModCRE Homology model CCTCCTGGGGGGGGGGCGGAGGGG Region 182-377 · 1 3D model Open · Scan
TFS_tr_B3KPY4_B3KPY4_HUMAN:220:371_2i13_A_1 ModCRE Homology model AGCCAATACCCTCTAGTTCGT Region 220-371 · 1 3D model Open · Scan
TFS_tr_B3KPY4_B3KPY4_HUMAN:236:345_5ei9_E_1 ModCRE Homology model CCCCCCGGGGGGGCCCC Region 236-345 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 380 aa
182-377

Region 182-377 5 PWM

Residues
196 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13465 · Zinc-finger double domain
3D models
8 active PDBs · 8 summary rows
Templates
1LLM, 2I13, 2WTY, 4AUW, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
8 active PDB models 8 summary rows
Region 182-3778 models · 8 summary rows
Actions
Predicted = Low DIMER_tr_B3KPY4_B3KPY4_HUMAN:218:255_2wty_B_1 2wty 218-255 View model · PDB
Predicted = Low DIMER_tr_B3KPY4_B3KPY4_HUMAN:218:255_4auw_B_1 4auw 218-255 View model · PDB
Predicted = Low DIMER_tr_B3KPY4_B3KPY4_HUMAN:320:373_1llm_D_1 1llm 320-373 View model · PDB
Predicted = Low TFS_tr_B3KPY4_B3KPY4_HUMAN:182:377_5v3j_E_1 5v3j 182-377 View model · PDB
Predicted = Low TFS_tr_B3KPY4_B3KPY4_HUMAN:182:377_5v3m_C_1 5v3m 182-377 View model · PDB
Predicted = Low TFS_tr_B3KPY4_B3KPY4_HUMAN:182:377_5wjq_D_1 5wjq 182-377 View model · PDB
Predicted = Low TFS_tr_B3KPY4_B3KPY4_HUMAN:220:371_2i13_A_1 2i13 220-371 View model · PDB
Predicted = Low TFS_tr_B3KPY4_B3KPY4_HUMAN:236:345_5ei9_E_1 5ei9 236-345 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 2i13 174:377 220 371 P:A · DNA:C,D 60.8% / 75.2% 98 View · PDB TFS_tr_B3KPY4_B3KPY4_HUMAN:220:371_2i13_A_1
5 5ei9 174:377 236 345 P:E · DNA:A,B 56.8% / 70.3% 99 View · PDB TFS_tr_B3KPY4_B3KPY4_HUMAN:236:345_5ei9_E_1
2 5v3m 174:377 182 377 P:C · DNA:A,B 49.0% / 64.1% 70 View · PDB TFS_tr_B3KPY4_B3KPY4_HUMAN:182:377_5v3m_C_1
3 5v3j 174:377 182 377 P:E · DNA:A,B 49.0% / 64.1% 70 View · PDB TFS_tr_B3KPY4_B3KPY4_HUMAN:182:377_5v3j_E_1
4 5wjq 174:377 182 377 P:D · DNA:A,B 49.0% / 63.6% 69 View · PDB TFS_tr_B3KPY4_B3KPY4_HUMAN:182:377_5wjq_D_1
1 1llm 174:377 320,320 373,373 P:C,D · DNA:A,B 44.4% / 61.1% 62,63 View · PDB DIMER_tr_B3KPY4_B3KPY4_HUMAN:320:373_1llm_D_1
2 4auw 174:377 218,218 255,255 P:A,B · DNA:C,D 41.0% / 56.4% 43,44 View · PDB DIMER_tr_B3KPY4_B3KPY4_HUMAN:218:255_4auw_B_1
3 2wty 174:377 218,218 255,255 P:A,B · DNA:C,D 41.0% / 56.4% 40,39 View · PDB DIMER_tr_B3KPY4_B3KPY4_HUMAN:218:255_2wty_B_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
184-206PF00096Zinc finger, C2H2 typeoverlaps 182-377
213-233PF00096Zinc finger, C2H2 typeoverlaps 182-377
239-261PF00096Zinc finger, C2H2 typeoverlaps 182-377
267-289PF00096Zinc finger, C2H2 typeoverlaps 182-377
298-316PF00096Zinc finger, C2H2 typeoverlaps 182-377
337-361PF13465Zinc-finger double domainoverlaps 182-377