ModCRE DB

Transcription factor

B3KQ54

cDNA FLJ32898 fis, clone TESTI2005396, highly similar to Homo sapiens zinc finger protein 132 (clone pHZ-12) (ZNF132), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 706 aa

78 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M07588_2.00 NN 70+% CisBP TCCTTCCCTCTTTCC 99.8% identity Open · Scan
Nearest Neighbor (70% - 40%)77
MotifPredictionSourceDNA bindingSupportLogoActions
M00944_2.00 NN 70-40% CisBP TCGCTATAA 66.2% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 65.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 63.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 63.8% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 63.6% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 63.0% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 62.6% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 62.3% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.9% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 61.5% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 61.4% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 58.5% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 58.5% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 58.5% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 58.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 57.6% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 57.4% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 57.4% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 57.4% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 57.1% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 57.1% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 56.9% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 56.7% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 56.7% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 56.6% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 56.5% identity Open · Scan
M08859_2.00 NN 70-40% CisBP CATTTTTTCCTCCTAGGCCT 55.8% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 55.7% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 55.5% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 55.2% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 55.2% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.2% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 55.2% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 55.2% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 54.6% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 54.4% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 54.4% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 54.4% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 54.4% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 54.1% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 54.0% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 54.0% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 53.9% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 53.8% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 53.5% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 53.2% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 53.2% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 53.1% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 52.8% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 52.8% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 52.8% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 52.7% identity Open · Scan
M04610_2.00 NN 70-40% CisBP CGGCGACGCGAACAC 52.6% identity Open · Scan
M07685_2.00 NN 70-40% CisBP CTTTCCAGCCAC 52.6% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 52.4% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 52.2% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 52.2% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 52.1% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 52.0% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 51.9% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 51.8% identity Open · Scan
M07687_2.00 NN 70-40% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 51.6% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 51.5% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 51.5% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 51.5% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 51.4% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 51.3% identity Open · Scan
MA0056.1 NN 70-40% JASPAR TGGGGA 51.2% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 51.1% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.9% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 50.7% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 50.7% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 50.7% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 50.3% identity Open · Scan
M01883_2.00 NN 70-40% CisBP TGCCCCTGA 50.0% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.0% identity Open · Scan
M08312_2.00 NN 70-40% CisBP ATTGGGTTTCTGTTGCTT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 706 aa
344-622

Region 344-622 0 PWM

Residues
279 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5WJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 344-6221 model
Actions
Predicted = Low TFS_B3KQ54:344:622_5wjq_D_1 5wjq 344-622 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
37-78PF01352KRAB boxNo overlap with loaded model regions
291-313PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
347-369PF00096Zinc finger, C2H2 typeoverlaps 344-622
375-397PF00096Zinc finger, C2H2 typeoverlaps 344-622
403-425PF00096Zinc finger, C2H2 typeoverlaps 344-622
431-453PF00096Zinc finger, C2H2 typeoverlaps 344-622
459-481PF00096Zinc finger, C2H2 typeoverlaps 344-622
487-509PF00096Zinc finger, C2H2 typeoverlaps 344-622
515-537PF00096Zinc finger, C2H2 typeoverlaps 344-622
543-565PF00096Zinc finger, C2H2 typeoverlaps 344-622
571-593PF00096Zinc finger, C2H2 typeoverlaps 344-622
599-621PF00096Zinc finger, C2H2 typeoverlaps 344-622
627-649PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
655-677PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
683-705PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions