ModCRE DB

Transcription factor

B3KR55

cDNA FLJ33720 fis, clone BRAWH2009590, highly similar to Zinc finger protein 23

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 643 aa

120 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)114
MotifPredictionSourceDNA bindingSupportLogoActions
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 67.1% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 67.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 67.0% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 66.5% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 65.8% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 65.8% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 65.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 64.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 64.7% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 64.7% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 64.7% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 63.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 63.5% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 62.9% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 62.8% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 62.8% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 62.3% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 61.9% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 61.5% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 61.1% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 60.7% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 60.7% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 60.3% identity Open · Scan
M08365_2.00 NN 70-40% CisBP GCCAGCAGCCATCAG 60.2% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 60.1% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 59.9% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 59.3% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 59.3% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 58.9% identity Open · Scan
M07685_2.00 NN 70-40% CisBP CTTTCCAGCCAC 58.7% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 58.6% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 58.6% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 58.2% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 58.2% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 58.2% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 57.7% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 57.6% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 57.4% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 57.2% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 56.8% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 56.7% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 56.7% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 56.7% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 56.6% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 56.6% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 56.1% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 56.0% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 56.0% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 56.0% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 55.8% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 55.8% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 55.6% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 55.2% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 55.2% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 55.1% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 54.8% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 54.8% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 54.7% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 54.6% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 54.5% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 54.5% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 54.5% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 54.4% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 54.0% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 53.7% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 53.7% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 53.4% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 53.3% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 53.3% identity Open · Scan
MA1600.1 NN 70-40% JASPAR ATACAGTCCACCCCTTTA 53.3% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 53.2% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 53.2% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 53.2% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 53.1% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 53.0% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 53.0% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 53.0% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 52.8% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 52.3% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 52.2% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 52.1% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 52.0% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 52.0% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 52.0% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 51.9% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.7% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 51.6% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 51.5% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 51.5% identity Open · Scan
M02913_2.00 NN 70-40% CisBP TTCGTGGCATTTTTCTA 51.3% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 51.3% identity Open · Scan
M07600_2.00 NN 70-40% CisBP GCATTAGC 51.0% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 51.0% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 50.9% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.9% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.7% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 50.7% identity Open · Scan
M08390_2.00 NN 70-40% CisBP GCTTTGTTGACTCAC 50.7% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 50.6% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 50.6% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 50.4% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 50.3% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 50.3% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 50.2% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 50.2% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 50.2% identity Open · Scan
MA1592.1 NN 70-40% JASPAR GGTATGAGTTCTCGCT 50.2% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 50.2% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 50.1% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 50.1% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 50.1% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 50.1% identity Open · Scan
M00132_2.00 NN 70-40% CisBP TGCTACCGTT 50.0% identity Open · Scan
M07607_2.00 NN 70-40% CisBP GGCTCCACG 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B3KR55_B3KR55_HUMAN:222:273_1llm_D_1 ModCRE Homology model TCCGGGCCCGGG Region 222-273 · 1 3D model Open · Scan
TFS_tr_B3KR55_B3KR55_HUMAN:249:527_5wjq_D_1 ModCRE Homology model CCGGCCGGCTGCCCCTTTCCCCCCTGGG Region 249-527 · 1 3D model Open · Scan
TFS_tr_B3KR55_B3KR55_HUMAN:308:598_7w1m_H_1 ModCRE Homology model TGGAAACCCCAGGGAAAGGGAAAGAAAGACAATCGGGCCCAAA Region 308-598 · 1 3D model Open · Scan
TFS_tr_B3KR55_B3KR55_HUMAN:335:611_5v3j_E_1 ModCRE Homology model CCCACCGCGGCCCCCCCGGGGTACTA Region 335-611 · 1 3D model Open · Scan
TFS_tr_B3KR55_B3KR55_HUMAN:335:611_5v3m_C_1 ModCRE Homology model GGTTTTTTTCACCCCCCCCCCCCCCT Region 335-611 · 1 3D model Open · Scan
TFS_tr_B3KR55_B3KR55_HUMAN:373:526_2i13_A_1 ModCRE Homology model GCGGCGCTATATGCCGCATTT Region 373-526 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 643 aa
222-611

Region 222-611 6 PWM

Residues
390 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 222-6116 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B3KR55_B3KR55_HUMAN:222:273_1llm_D_1 1llm 222-273 View model · PDB
Predicted = Low TFS_tr_B3KR55_B3KR55_HUMAN:249:527_5wjq_D_1 5wjq 249-527 View model · PDB
Predicted = Low TFS_tr_B3KR55_B3KR55_HUMAN:308:598_7w1m_H_1 7w1m 308-598 View model · PDB
Predicted = Low TFS_tr_B3KR55_B3KR55_HUMAN:335:611_5v3j_E_1 5v3j 335-611 View model · PDB
Predicted = Low TFS_tr_B3KR55_B3KR55_HUMAN:335:611_5v3m_C_1 5v3m 335-611 View model · PDB
Predicted = Low TFS_tr_B3KR55_B3KR55_HUMAN:373:526_2i13_A_1 2i13 373-526 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 170:611 373 526 P:A · DNA:C,D 57.8% / 68.8% 100 View · PDB TFS_tr_B3KR55_B3KR55_HUMAN:373:526_2i13_A_1
2 5v3m 170:611 335 611 P:C · DNA:A,B 54.2% / 70.4% 100 View · PDB TFS_tr_B3KR55_B3KR55_HUMAN:335:611_5v3m_C_1
3 5v3j 170:611 335 611 P:E · DNA:A,B 54.2% / 70.4% 100 View · PDB TFS_tr_B3KR55_B3KR55_HUMAN:335:611_5v3j_E_1
1 5wjq 170:611 249 527 P:D · DNA:A,B 53.4% / 72.0% 99 View · PDB TFS_tr_B3KR55_B3KR55_HUMAN:249:527_5wjq_D_1
1 1llm 170:611 222,222 273,273 P:C,D · DNA:A,B 44.2% / 63.5% 59,61 View · PDB DIMER_tr_B3KR55_B3KR55_HUMAN:222:273_1llm_D_1
5 7w1m 170:611 308 598 P:H · DNA:F,G 35.0% / 53.7% 90 View · PDB TFS_tr_B3KR55_B3KR55_HUMAN:308:598_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
224-246PF00096Zinc finger, C2H2 typeoverlaps 222-611
252-274PF00096Zinc finger, C2H2 typeoverlaps 222-611
308-330PF00096Zinc finger, C2H2 typeoverlaps 222-611
336-358PF00096Zinc finger, C2H2 typeoverlaps 222-611
364-386PF00096Zinc finger, C2H2 typeoverlaps 222-611
392-414PF00096Zinc finger, C2H2 typeoverlaps 222-611
420-442PF00096Zinc finger, C2H2 typeoverlaps 222-611
448-470PF00096Zinc finger, C2H2 typeoverlaps 222-611
476-498PF00096Zinc finger, C2H2 typeoverlaps 222-611
504-526PF00096Zinc finger, C2H2 typeoverlaps 222-611
532-554PF00096Zinc finger, C2H2 typeoverlaps 222-611
560-582PF00096Zinc finger, C2H2 typeoverlaps 222-611
588-610PF00096Zinc finger, C2H2 typeoverlaps 222-611
616-638PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions