ModCRE DB

Transcription factor

B3KRP4

cDNA FLJ34665 fis, clone LIVER2000626, highly similar to Zinc finger protein 38

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 429 aa

117 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)3
MotifPredictionSourceDNA bindingSupportLogoActions
M07613_2.00 NN 70+% CisBP TCACTCAGTCATTCA 99.4% identity Open · Scan
M00939_2.00 NN 70+% CisBP CCACCTCA 72.9% identity Open · Scan
M00960_2.00 NN 70+% CisBP TGCATCCC 70.5% identity Open · Scan
Nearest Neighbor (70% - 40%)114
MotifPredictionSourceDNA bindingSupportLogoActions
M00943_2.00 NN 70-40% CisBP CCCGCTGC 69.4% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 69.4% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 69.4% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 68.5% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 68.4% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 68.2% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 68.2% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 68.2% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 67.1% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 67.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 67.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 65.8% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 65.6% identity Open · Scan
MA1654.1 NN 70-40% JASPAR AATAGGGAGCCATGGAAGGTTTT 65.6% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 65.1% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 65.0% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 65.0% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 64.1% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 63.7% identity Open · Scan
M08365_2.00 NN 70-40% CisBP GCCAGCAGCCATCAG 63.7% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 63.4% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 63.2% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 62.8% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 61.9% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 61.7% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 61.3% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 61.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 61.2% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 60.9% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 60.9% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 60.7% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 60.7% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 60.5% identity Open · Scan
M00774_2.00 NN 70-40% CisBP TTAGTATACACAAGT 60.4% identity Open · Scan
M07593_2.00 NN 70-40% CisBP AGATGAAGTCACCCCTCTTAC 60.3% identity Open · Scan
M07715_2.00 NN 70-40% CisBP CCGCCGCCGCCGTGG 60.3% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 60.1% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 60.1% identity Open · Scan
M08330_2.00 NN 70-40% CisBP TGGGTGCCGGACTGCTGTTCC 59.4% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 59.3% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 59.3% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 59.2% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 59.1% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 58.9% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 58.7% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 58.6% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 58.5% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 58.5% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 58.2% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 58.1% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 58.1% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 57.8% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 57.7% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 57.5% identity Open · Scan
M07725_2.00 NN 70-40% CisBP AAGCACTGTACT 57.4% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 57.3% identity Open · Scan
M07754_2.00 NN 70-40% CisBP CGCCCCCTCCCT 57.0% identity Open · Scan
M08234_2.00 NN 70-40% CisBP GTCAACTTGACTGGGCCA 57.0% identity Open · Scan
M08381_2.00 NN 70-40% CisBP ACATTTTGTCCTCCTAGTCCT 57.0% identity Open · Scan
M08386_2.00 NN 70-40% CisBP GCCTTAAAAGCTCAGCAC 57.0% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 56.8% identity Open · Scan
M07595_2.00 NN 70-40% CisBP GCCTGTTCCTCTCCC 56.8% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 56.8% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 56.8% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 56.6% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 56.6% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 56.6% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 56.6% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 56.6% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 56.3% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 56.2% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 56.1% identity Open · Scan
M07634_2.00 NN 70-40% CisBP AAACGTCCACG 56.0% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 55.8% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 55.7% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 55.7% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 55.6% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 55.5% identity Open · Scan
M08300_2.00 NN 70-40% CisBP CTGCCCAATTCAT 55.4% identity Open · Scan
M07662_2.00 NN 70-40% CisBP CCTGTGTCCTCCCTGGTCCCC 55.3% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 55.3% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 55.3% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 55.3% identity Open · Scan
M07747_2.00 NN 70-40% CisBP TGGTCTATAAAGGGCCTGGTT 55.2% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 55.1% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 54.9% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 54.8% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 54.5% identity Open · Scan
M07638_2.00 NN 70-40% CisBP TGCAGCTCCCTGCCC 54.5% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 54.0% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 53.5% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 53.1% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 52.6% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 52.2% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 52.1% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 52.0% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 52.0% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 51.7% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 51.7% identity Open · Scan
M07657_2.00 NN 70-40% CisBP CCCCTGCATGTCCCCATTTTT 51.4% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 51.0% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 51.0% identity Open · Scan
M07645_2.00 NN 70-40% CisBP CTCCTT 51.0% identity Open · Scan
M01044_2.00 NN 70-40% CisBP TCTCTCTTTC 50.9% identity Open · Scan
M01432_2.00 NN 70-40% CisBP GACGCCAC 50.9% identity Open · Scan
M01442_2.00 NN 70-40% CisBP ACCCCACATT 50.8% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 50.8% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 50.7% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 50.7% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 50.6% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 50.4% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.3% identity Open · Scan
MA0056.1 NN 70-40% JASPAR TGGGGA 50.1% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 429 aa
152-418

Region 152-418 0 PWM

Residues
267 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5WJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 152-4181 model
Actions
Predicted = Low TFS_B3KRP4:152:418_5wjq_D_1 5wjq 152-418 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
33-74PF01352KRAB boxNo overlap with loaded model regions
183-205PF00096Zinc finger, C2H2 typeoverlaps 152-418
211-233PF00096Zinc finger, C2H2 typeoverlaps 152-418
239-261PF00096Zinc finger, C2H2 typeoverlaps 152-418
267-289PF00096Zinc finger, C2H2 typeoverlaps 152-418
295-317PF00096Zinc finger, C2H2 typeoverlaps 152-418
323-345PF00096Zinc finger, C2H2 typeoverlaps 152-418
352-373PF00096Zinc finger, C2H2 typeoverlaps 152-418
379-401PF00096Zinc finger, C2H2 typeoverlaps 152-418