ModCRE DB

Transcription factor

B3KTR1

cDNA FLJ38629 fis, clone HHDPC1000163, highly similar to Homo sapiens zinc finger protein 187 (ZNF187), transcript variant 3, mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 344 aa

57 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)51
MotifPredictionSourceDNA bindingSupportLogoActions
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 61.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 61.4% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 60.2% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 60.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 59.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 59.0% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 59.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 57.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 57.8% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 56.6% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 56.6% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 56.6% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 56.6% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 56.2% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 54.7% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 54.2% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 53.8% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.4% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 53.1% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 53.1% identity Open · Scan
MA0748.1 NN 70-40% JASPAR GTCCGCCATTA 53.1% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 53.0% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 52.9% identity Open · Scan
M02913_2.00 NN 70-40% CisBP TTCGTGGCATTTTTCTA 52.6% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 52.6% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 52.5% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 52.5% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 52.5% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 52.4% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 52.2% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 52.2% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 51.9% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 51.4% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 51.4% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 51.2% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 51.1% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 51.0% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 51.0% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 51.0% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.0% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 50.9% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 50.9% identity Open · Scan
M08944_2.00 NN 70-40% CisBP TACCATGCTGTTTTGATTAC 50.9% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 50.8% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 50.8% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 50.5% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 50.5% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 50.2% identity Open · Scan
MA1597.1 NN 70-40% JASPAR CCCAGGGAAGCCATTTC 50.2% identity Open · Scan
M01181_2.00 NN 70-40% CisBP GCGCATCCCC 50.0% identity Open · Scan
MA0095.1 NN 70-40% JASPAR GCCATC 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B3KTR1_B3KTR1_HUMAN:174:225_1llm_D_1 ModCRE Homology model GCCCGCGCGGGA Region 174-225 · 1 3D model Open · Scan
TFS_tr_B3KTR1_B3KTR1_HUMAN:145:255_5ei9_E_1 ModCRE Homology model CCCCCGGGGCCGGGCCT Region 145-255 · 1 3D model Open · Scan
TFS_tr_B3KTR1_B3KTR1_HUMAN:157:310_2i13_A_1 ModCRE Homology model CTAACTATGGTACCTGTATGT Region 157-310 · 1 3D model Open · Scan
TFS_tr_B3KTR1_B3KTR1_HUMAN:66:338_5wjq_D_1 ModCRE Homology model GGGGGGGGGGGGGGGCCGGGCTGGGCCC Region 66-338 · 1 3D model Open · Scan
TFS_tr_B3KTR1_B3KTR1_HUMAN:70:338_5v3j_E_1 ModCRE Homology model TTCCCCCCCGGGGGTCCGCGGGGGGG Region 70-338 · 1 3D model Open · Scan
TFS_tr_B3KTR1_B3KTR1_HUMAN:70:338_5v3m_C_1 ModCRE Homology model TTGCCCGGGGGGGCGGGTGGGGAGCC Region 70-338 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 344 aa
66-338

Region 66-338 6 PWM

Residues
273 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 66-3386 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B3KTR1_B3KTR1_HUMAN:174:225_1llm_D_1 1llm 174-225 View model · PDB
Predicted = Low TFS_tr_B3KTR1_B3KTR1_HUMAN:145:255_5ei9_E_1 5ei9 145-255 View model · PDB
Predicted = Low TFS_tr_B3KTR1_B3KTR1_HUMAN:157:310_2i13_A_1 2i13 157-310 View model · PDB
Predicted = Low TFS_tr_B3KTR1_B3KTR1_HUMAN:66:338_5wjq_D_1 5wjq 66-338 View model · PDB
Predicted = Low TFS_tr_B3KTR1_B3KTR1_HUMAN:70:338_5v3j_E_1 5v3j 70-338 View model · PDB
Predicted = Low TFS_tr_B3KTR1_B3KTR1_HUMAN:70:338_5v3m_C_1 5v3m 70-338 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 66:344 145 255 P:E · DNA:A,B 52.3% / 64.9% 100 View · PDB TFS_tr_B3KTR1_B3KTR1_HUMAN:145:255_5ei9_E_1
4 2i13 66:344 157 310 P:A · DNA:C,D 50.6% / 61.0% 100 View · PDB TFS_tr_B3KTR1_B3KTR1_HUMAN:157:310_2i13_A_1
1 1llm 66:344 174,174 225,225 P:C,D · DNA:A,B 48.1% / 61.5% 59,61 View · PDB DIMER_tr_B3KTR1_B3KTR1_HUMAN:174:225_1llm_D_1
1 5v3m 66:344 70 338 P:C · DNA:A,B 42.3% / 56.9% 97 View · PDB TFS_tr_B3KTR1_B3KTR1_HUMAN:70:338_5v3m_C_1
2 5v3j 66:344 70 338 P:E · DNA:A,B 42.3% / 56.9% 97 View · PDB TFS_tr_B3KTR1_B3KTR1_HUMAN:70:338_5v3j_E_1
3 5wjq 66:344 66 338 P:D · DNA:A,B 40.3% / 56.8% 97 View · PDB TFS_tr_B3KTR1_B3KTR1_HUMAN:66:338_5wjq_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
148-170PF00096Zinc finger, C2H2 typeoverlaps 66-338
176-198PF00096Zinc finger, C2H2 typeoverlaps 66-338
204-226PF00096Zinc finger, C2H2 typeoverlaps 66-338
233-254PF00096Zinc finger, C2H2 typeoverlaps 66-338
260-282PF00096Zinc finger, C2H2 typeoverlaps 66-338
288-310PF00096Zinc finger, C2H2 typeoverlaps 66-338
316-338PF00096Zinc finger, C2H2 typeoverlaps 66-338