ModCRE DB

Transcription factor

B3KU63

cDNA FLJ39250 fis, clone OCBBF2008691, highly similar to Transcription factor SOX-5

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 587 aa

38 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)9
MotifPredictionSourceDNA bindingSupportLogoActions
M11309_2.00 NN 70+% CisBP TTAACAATAC 93.4% identity Open · Scan
MA0087.1 NN 70+% JASPAR ATTGTTA 90.3% identity Open · Scan
M03981_2.00 NN 70+% CisBP ATTGTTCGGTGGT 86.2% identity Open · Scan
M09404_2.00 NN 70+% CisBP TAACAATA 82.2% identity Open · Scan
MA0869.1 NN 70+% JASPAR AACAATTTCAGTGTT 74.0% identity Open · Scan
M02488_2.00 NN 70+% CisBP CATTGTTTTC 70.3% identity Open · Scan
M09410_2.00 NN 70+% CisBP TCCTTTGTTCTC 70.3% identity Open · Scan
MA0867.1 NN 70+% JASPAR GAACAATTGCAGTGTT 70.3% identity Open · Scan
MA1561.1 NN 70+% JASPAR ACCGAACAATG 70.3% identity Open · Scan
Nearest Neighbor (70% - 40%)29
MotifPredictionSourceDNA bindingSupportLogoActions
M00204_2.00 NN 70-40% CisBP AAAACAAT 66.6% identity Open · Scan
M03983_2.00 NN 70-40% CisBP AAACAATTTCAGTGTTT 66.6% identity Open · Scan
M03516_2.00 NN 70-40% CisBP AACAATGTTCATTGTT 65.5% identity Open · Scan
MA0078.1 NN 70-40% JASPAR CTCATTGTC 64.7% identity Open · Scan
M03979_2.00 NN 70-40% CisBP AAACAATAACATTGTTT 62.9% identity Open · Scan
MA1562.1 NN 70-40% JASPAR CCGAACAATG 62.9% identity Open · Scan
M00197_2.00 NN 70-40% CisBP AAAACAAT 62.0% identity Open · Scan
MA0868.1 NN 70-40% JASPAR AACAATGTGCAGTGTT 62.0% identity Open · Scan
MA1563.1 NN 70-40% JASPAR CACAATGC 60.6% identity Open · Scan
M00201_2.00 NN 70-40% CisBP ATTGTTCTGC 60.0% identity Open · Scan
M05754_2.00 NN 70-40% CisBP CATTGTTC 60.0% identity Open · Scan
M03538_2.00 NN 70-40% CisBP AAACAATGACATTGTTT 59.2% identity Open · Scan
MA0514.1 NN 70-40% JASPAR CCTTTGTTTT 59.2% identity Open · Scan
MA0866.1 NN 70-40% JASPAR AACAATGGTAGTGTT 59.2% identity Open · Scan
MA0077.1 NN 70-40% JASPAR CCATTGTTC 58.8% identity Open · Scan
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 58.6% identity Open · Scan
M09694_2.00 NN 70-40% CisBP AACAATGGAC 58.6% identity Open · Scan
M03974_2.00 NN 70-40% CisBP AACAATAACATTGTT 57.5% identity Open · Scan
M03537_2.00 NN 70-40% CisBP ATGAATTGCAGTCAT 55.8% identity Open · Scan
MA0442.1 NN 70-40% JASPAR CTTTGT 55.8% identity Open · Scan
M05769_2.00 NN 70-40% CisBP CCATTGTGAG 55.5% identity Open · Scan
MA0142.1 NN 70-40% JASPAR CTTTGTTATGCAAAT 54.8% identity Open · Scan
MA0143.4 NN 70-40% JASPAR AAACAATGGAA 54.8% identity Open · Scan
M05892_2.00 NN 70-40% CisBP AAACAATAGA 54.6% identity Open · Scan
M03508_2.00 NN 70-40% CisBP AACAATAACATTGTT 53.8% identity Open · Scan
MA0084.1 NN 70-40% JASPAR GTAAACAAT 53.8% identity Open · Scan
MA1152.1 NN 70-40% JASPAR CTATTGTTTT 53.8% identity Open · Scan
MA0515.1 NN 70-40% JASPAR CCATTGTTTT 52.7% identity Open · Scan
MA0870.1 NN 70-40% JASPAR AACAATAACATTGTT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 587 aa
505-526

Region 505-526 0 PWM

Residues
22 aa
Domains
No overlapping PFAM annotation recorded
3D models
1 active PDB
Templates
1J46
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 505-5261 model
Actions
Predicted = Low TFS_B3KU63:505:526_1j46_A_1 1j46 505-526 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Imported domain tags5
Exonuc_VII_LHMG_boxHemXLOH1CR12OmpH