ModCRE DB

Transcription factor

B3KUA7

cDNA FLJ39512 fis, clone PROST2018977, highly similar to Homo sapiens zinc finger protein 530 (ZNF530), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 599 aa

69 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)65
MotifPredictionSourceDNA bindingSupportLogoActions
M00944_2.00 NN 70-40% CisBP TCGCTATAA 65.4% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 63.5% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 63.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 62.3% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 61.9% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 61.8% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 61.1% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 61.1% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 60.8% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 60.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 60.2% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.2% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 58.8% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 58.5% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 57.8% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 57.6% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 57.0% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 56.4% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 56.0% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 56.0% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 55.5% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.2% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 55.2% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 55.0% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 54.7% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 54.3% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 54.2% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 54.2% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 54.1% identity Open · Scan
M01440_2.00 NN 70-40% CisBP TACGCCAC 53.8% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 53.8% identity Open · Scan
M08234_2.00 NN 70-40% CisBP GTCAACTTGACTGGGCCA 53.1% identity Open · Scan
M07610_2.00 NN 70-40% CisBP CCTTCTTCCTCCCCCCTGCCCACC 53.0% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 53.0% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 53.0% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 53.0% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 53.0% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 52.0% identity Open · Scan
M01453_2.00 NN 70-40% CisBP ACGCCACA 51.9% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 51.7% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 51.6% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 51.5% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 51.3% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.2% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 50.9% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 50.8% identity Open · Scan
M00142_2.00 NN 70-40% CisBP GTGCTCCT 50.7% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.7% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 50.6% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 50.6% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 50.6% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.5% identity Open · Scan
M07618_2.00 NN 70-40% CisBP CCTTTGGTGCTC 50.5% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 50.4% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 50.4% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 50.3% identity Open · Scan
M07685_2.00 NN 70-40% CisBP CTTTCCAGCCAC 50.3% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 50.3% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 50.2% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 50.2% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 50.1% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 50.1% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 50.0% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 50.0% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 50.0% identity Open · Scan
ModCRE4
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B3KUA7_B3KUA7_HUMAN:267:542_5v3j_E_1 ModCRE Homology model CCCCTCCGGTCGGGGGCCCCCCCCCA Region 267-542 · 1 3D model Open · Scan
TFS_tr_B3KUA7_B3KUA7_HUMAN:267:542_5v3m_C_1 ModCRE Homology model CCACAGGGCCTGACCCCCCCCAGCCT Region 267-542 · 1 3D model Open · Scan
TFS_tr_B3KUA7_B3KUA7_HUMAN:292:570_5wjq_D_1 ModCRE Homology model CCTCCCAGCCGCTACCCCCCCCGCCCCC Region 292-570 · 1 3D model Open · Scan
TFS_tr_B3KUA7_B3KUA7_HUMAN:444:597_2i13_A_1 ModCRE Homology model AATTACAAGGCAGCCAGCCTC Region 444-597 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 599 aa
266-597

Region 266-597 4 PWM

Residues
332 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 266-5976 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B3KUA7_B3KUA7_HUMAN:545:596_1llm_D_1 1llm 545-596 View model · PDB
Predicted = Low TFS_tr_B3KUA7_B3KUA7_HUMAN:266:565_7w1m_H_1 7w1m 266-565 View model · PDB
Predicted = Low TFS_tr_B3KUA7_B3KUA7_HUMAN:267:542_5v3j_E_1 5v3j 267-542 View model · PDB
Predicted = Low TFS_tr_B3KUA7_B3KUA7_HUMAN:267:542_5v3m_C_1 5v3m 267-542 View model · PDB
Predicted = Low TFS_tr_B3KUA7_B3KUA7_HUMAN:292:570_5wjq_D_1 5wjq 292-570 View model · PDB
Predicted = Low TFS_tr_B3KUA7_B3KUA7_HUMAN:444:597_2i13_A_1 2i13 444-597 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 235:599 444 597 P:A · DNA:C,D 57.1% / 72.1% 100 View · PDB TFS_tr_B3KUA7_B3KUA7_HUMAN:444:597_2i13_A_1
1 5wjq 235:599 292 570 P:D · DNA:A,B 51.6% / 70.3% 99 View · PDB TFS_tr_B3KUA7_B3KUA7_HUMAN:292:570_5wjq_D_1
2 5v3m 235:599 267 542 P:C · DNA:A,B 51.1% / 69.2% 99 View · PDB TFS_tr_B3KUA7_B3KUA7_HUMAN:267:542_5v3m_C_1
3 5v3j 235:599 267 542 P:E · DNA:A,B 51.1% / 69.2% 99 View · PDB TFS_tr_B3KUA7_B3KUA7_HUMAN:267:542_5v3j_E_1
1 1llm 235:599 545,545 596,596 P:C,D · DNA:A,B 42.3% / 67.3% 59,61 View · PDB DIMER_tr_B3KUA7_B3KUA7_HUMAN:545:596_1llm_D_1
5 7w1m 235:599 266 565 P:H · DNA:F,G 35.0% / 52.8% 93 View · PDB TFS_tr_B3KUA7_B3KUA7_HUMAN:266:565_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
14-54PF01352KRAB boxNo overlap with loaded model regions
239-261PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
267-289PF00096Zinc finger, C2H2 typeoverlaps 266-597
299-317PF00096Zinc finger, C2H2 typeoverlaps 266-597
323-345PF00096Zinc finger, C2H2 typeoverlaps 266-597
351-373PF00096Zinc finger, C2H2 typeoverlaps 266-597
407-429PF00096Zinc finger, C2H2 typeoverlaps 266-597
435-457PF00096Zinc finger, C2H2 typeoverlaps 266-597
463-485PF00096Zinc finger, C2H2 typeoverlaps 266-597
491-513PF00096Zinc finger, C2H2 typeoverlaps 266-597
519-541PF00096Zinc finger, C2H2 typeoverlaps 266-597
547-569PF00096Zinc finger, C2H2 typeoverlaps 266-597
575-597PF00096Zinc finger, C2H2 typeoverlaps 266-597