ModCRE DB

Transcription factor

B3KUG7

cDNA FLJ39850 fis, clone SPLEN2014739, highly similar to Zinc finger protein 101

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 436 aa

22 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)17
MotifPredictionSourceDNA bindingSupportLogoActions
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 59.7% identity Open · Scan
M03583_2.00 NN 70-40% CisBP GGATGCTGTG 56.7% identity Open · Scan
MA0155.1 NN 70-40% JASPAR TGTCAGGGGGCG 56.5% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 55.4% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 55.4% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 55.4% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 54.2% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 54.2% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 53.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 53.0% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 53.0% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 53.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 53.0% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 51.4% identity Open · Scan
M07627_2.00 NN 70-40% CisBP CAGTCACCTTCTGG 51.0% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 50.4% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B3KUG7_B3KUG7_HUMAN:364:412_1llm_D_1 ModCRE Homology model TTCGCGCGCGCG Region 364-412 · 1 3D model Open · Scan
TFS_tr_B3KUG7_B3KUG7_HUMAN:138:416_5wjq_D_1 ModCRE Homology model CGGGTGGGGGGGGGGCCGGCCTTAAACC Region 138-416 · 1 3D model Open · Scan
TFS_tr_B3KUG7_B3KUG7_HUMAN:140:416_5v3j_E_1 ModCRE Homology model GGCCGGGGGGGGACGGGGTTGGGGTG Region 140-416 · 1 3D model Open · Scan
TFS_tr_B3KUG7_B3KUG7_HUMAN:140:416_5v3m_C_1 ModCRE Homology model CCGGGGGGGTCCTCCCGGGAATTGCC Region 140-416 · 1 3D model Open · Scan
TFS_tr_B3KUG7_B3KUG7_HUMAN:262:416_2i13_A_1 ModCRE Homology model CCATTTATGCTTTAAAGACAA Region 262-416 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 436 aa
138-416

Region 138-416 5 PWM

Residues
279 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 138-4166 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B3KUG7_B3KUG7_HUMAN:364:412_1llm_D_1 1llm 364-412 View model · PDB
Predicted = Low TFS_tr_B3KUG7_B3KUG7_HUMAN:138:416_5wjq_D_1 5wjq 138-416 View model · PDB
Predicted = Low TFS_tr_B3KUG7_B3KUG7_HUMAN:140:416_5v3j_E_1 5v3j 140-416 View model · PDB
Predicted = Low TFS_tr_B3KUG7_B3KUG7_HUMAN:140:416_5v3m_C_1 5v3m 140-416 View model · PDB
Predicted = Low TFS_tr_B3KUG7_B3KUG7_HUMAN:158:412_7w1m_H_1 7w1m 158-412 View model · PDB
Predicted = Low TFS_tr_B3KUG7_B3KUG7_HUMAN:262:416_2i13_A_1 2i13 262-416 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 138:417 262 416 P:A · DNA:C,D 47.1% / 67.1% 100 View · PDB TFS_tr_B3KUG7_B3KUG7_HUMAN:262:416_2i13_A_1
1 5wjq 138:417 138 416 P:D · DNA:A,B 44.8% / 60.6% 98 View · PDB TFS_tr_B3KUG7_B3KUG7_HUMAN:138:416_5wjq_D_1
1 1llm 138:417 364,364 412,412 P:C,D · DNA:A,B 42.9% / 55.1% 56,57 View · PDB DIMER_tr_B3KUG7_B3KUG7_HUMAN:364:412_1llm_D_1
2 5v3m 138:417 140 416 P:C · DNA:A,B 40.8% / 61.7% 99 View · PDB TFS_tr_B3KUG7_B3KUG7_HUMAN:140:416_5v3m_C_1
3 5v3j 138:417 140 416 P:E · DNA:A,B 40.8% / 61.7% 99 View · PDB TFS_tr_B3KUG7_B3KUG7_HUMAN:140:416_5v3j_E_1
5 7w1m 138:417 158 412 P:H · DNA:F,G 30.8% / 48.8% 78 View · PDB TFS_tr_B3KUG7_B3KUG7_HUMAN:158:412_7w1m_H_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
3-44PF01352KRAB boxNo overlap with loaded model regions
169-191PF00096Zinc finger, C2H2 typeoverlaps 138-416
225-247PF00096Zinc finger, C2H2 typeoverlaps 138-416
253-276PF00096Zinc finger, C2H2 typeoverlaps 138-416
338-360PF00096Zinc finger, C2H2 typeoverlaps 138-416
394-416PF00096Zinc finger, C2H2 typeoverlaps 138-416