ModCRE DB

Transcription factor

B3KUR0

cDNA FLJ40410 fis, clone TESTI2037819, moderately similar to Zinc finger protein 610

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 471 aa

57 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
M07699_2.00 NN 70+% CisBP GGTTTAT 99.5% identity Open · Scan
M00955_2.00 NN 70+% CisBP ACGTCCTCT 71.7% identity Open · Scan
Nearest Neighbor (70% - 40%)55
MotifPredictionSourceDNA bindingSupportLogoActions
M00944_2.00 NN 70-40% CisBP TCGCTATAA 65.8% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 65.8% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 65.8% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 64.7% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 64.7% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 64.7% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 64.7% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 63.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 63.5% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 62.3% identity Open · Scan
M07764_2.00 NN 70-40% CisBP CTGCACTCTCCCCTTCCCCCCCTCCCC 60.4% identity Open · Scan
MA1597.1 NN 70-40% JASPAR CCCAGGGAAGCCATTTC 59.2% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 58.7% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 58.2% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 57.9% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 57.4% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 56.2% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 54.9% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 54.7% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 54.5% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 54.5% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 54.2% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 54.1% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 54.1% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 54.1% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 53.9% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 53.2% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 53.1% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 53.1% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 52.8% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 52.1% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 51.6% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 51.4% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 51.3% identity Open · Scan
M00217_2.00 NN 70-40% CisBP TTACTCAATAT 51.2% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 51.2% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 51.2% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 50.7% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.7% identity Open · Scan
M07618_2.00 NN 70-40% CisBP CCTTTGGTGCTC 50.7% identity Open · Scan
MA1155.1 NN 70-40% JASPAR TGCACACACTGAAAA 50.5% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 50.4% identity Open · Scan
M04515_2.00 NN 70-40% CisBP TATGCTATAACAAGCAGCCCC 50.4% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 50.3% identity Open · Scan
M07747_2.00 NN 70-40% CisBP TGGTCTATAAAGGGCCTGGTT 50.3% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 50.3% identity Open · Scan
M07754_2.00 NN 70-40% CisBP CGCCCCCTCCCT 50.2% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 50.2% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 50.1% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 50.1% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 50.1% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 50.0% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 50.0% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 50.0% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 471 aa
189-449

Region 189-449 0 PWM

Residues
261 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13465 · Zinc-finger double domain
3D models
1 active PDB
Templates
5WJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 189-4491 model
Actions
Predicted = Low TFS_B3KUR0:189:449_5wjq_D_1 5wjq 189-449 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
24-64PF01352KRAB boxNo overlap with loaded model regions
231-250PF00096Zinc finger, C2H2 typeoverlaps 189-449
258-280PF00096Zinc finger, C2H2 typeoverlaps 189-449
286-308PF00096Zinc finger, C2H2 typeoverlaps 189-449
314-336PF00096Zinc finger, C2H2 typeoverlaps 189-449
342-364PF00096Zinc finger, C2H2 typeoverlaps 189-449
370-392PF00096Zinc finger, C2H2 typeoverlaps 189-449
412-437PF13465Zinc-finger double domainoverlaps 189-449