ModCRE DB

Transcription factor

B3KV37

cDNA FLJ16096 fis, clone SPLEN2006232, highly similar to OXYSTEROLS RECEPTOR LXR-ALPHA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 447 aa

14 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
MA0494.1 NN 70+% JASPAR TGACCTAAAGTAACCTCTG 91.2% identity Open · Scan
Nearest Neighbor (70% - 40%)13
MotifPredictionSourceDNA bindingSupportLogoActions
MA0115.1 NN 70-40% JASPAR AAAGGTCAAAGGTCAAC 68.9% identity Open · Scan
M09275_2.00 NN 70-40% CisBP GGGTCACTTCAGGTCAG 60.8% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 56.5% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 56.5% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 54.5% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 53.2% identity Open · Scan
M09309_2.00 NN 70-40% CisBP AGGTCAGGGTGACCT 53.0% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 51.6% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 51.5% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 51.3% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 51.3% identity Open · Scan
M02409_2.00 NN 70-40% CisBP GAGATCAA 50.0% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 447 aa
96-171

Region 96-171 0 PWM

Residues
76 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1R0O
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 96-1711 model
Actions
Predicted = Low DIMER_B3KV37:96:171_1r0o_B_1 1r0o 96-171 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
97-164PF00105Double treble clef zinc finger, C4 typeoverlaps 96-171
252-430PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions