ModCRE DB

Transcription factor

B3KVF1

cDNA FLJ16476 fis, clone BRSSN2017530, highly similar to Homo sapiens zinc finger protein 302 (ZNF302), transcript variant 1, mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 367 aa

102 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)96
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 66.6% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 66.6% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 65.4% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 65.4% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 64.2% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 64.2% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 63.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 63.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 63.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 63.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 63.0% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 62.5% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 61.7% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 61.6% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 61.1% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 60.4% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 60.4% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 60.1% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 59.7% identity Open · Scan
MA1587.1 NN 70-40% JASPAR CCTCGACCTCCTGA 59.5% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 59.4% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 59.2% identity Open · Scan
M08347_2.00 NN 70-40% CisBP GCCCTGGGCAGC 58.7% identity Open · Scan
M07707_2.00 NN 70-40% CisBP TCCCGC 58.6% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 58.2% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 58.1% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 58.0% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 57.9% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 57.9% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 57.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 56.7% identity Open · Scan
M08279_2.00 NN 70-40% CisBP CCTCCCTCC 56.3% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 56.1% identity Open · Scan
M08860_2.00 NN 70-40% CisBP TCTTATAAGGGCACTAATCCCATT 56.0% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 55.9% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 55.7% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 55.6% identity Open · Scan
M08914_2.00 NN 70-40% CisBP ATTTAGTCCATTTACATTTAATGT 55.4% identity Open · Scan
M07699_2.00 NN 70-40% CisBP GGTTTAT 55.2% identity Open · Scan
M08291_2.00 NN 70-40% CisBP AATCCAGCCCTAGACTCTCCC 55.2% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 55.1% identity Open · Scan
M07658_2.00 NN 70-40% CisBP CCGCCGCAGCCGCCG 54.9% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 54.7% identity Open · Scan
M07767_2.00 NN 70-40% CisBP AAAAACCCCAGA 54.7% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.6% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 54.5% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 54.4% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 54.4% identity Open · Scan
M08330_2.00 NN 70-40% CisBP TGGGTGCCGGACTGCTGTTCC 54.3% identity Open · Scan
M07567_2.00 NN 70-40% CisBP CCACTCCACTCA 54.2% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 54.2% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 53.9% identity Open · Scan
M07590_2.00 NN 70-40% CisBP TTTTTTTCTTTTATTTTTTTTTTTTTTTTTTTT 53.7% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 53.7% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 53.6% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 53.5% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 53.5% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 53.4% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 53.2% identity Open · Scan
M08256_2.00 NN 70-40% CisBP GTGCCTT 53.1% identity Open · Scan
M04515_2.00 NN 70-40% CisBP TATGCTATAACAAGCAGCCCC 53.0% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 52.9% identity Open · Scan
MA1594.1 NN 70-40% JASPAR AGGGGACATCACTACAGATCCCAC 52.9% identity Open · Scan
M07687_2.00 NN 70-40% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 52.6% identity Open · Scan
M08386_2.00 NN 70-40% CisBP GCCTTAAAAGCTCAGCAC 52.5% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 52.4% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 52.4% identity Open · Scan
M07714_2.00 NN 70-40% CisBP AGCCCATTGGGGCCTATGCCC 52.3% identity Open · Scan
M08357_2.00 NN 70-40% CisBP GAGCCTGCTACTGAGCCTGGG 52.2% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 52.2% identity Open · Scan
M08311_2.00 NN 70-40% CisBP CTGGAACAGAAGGGGCGA 52.1% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 51.9% identity Open · Scan
M07565_2.00 NN 70-40% CisBP CCTCTGGGGGCTCGTCCA 51.8% identity Open · Scan
MA0130.1 NN 70-40% JASPAR ATCCAC 51.8% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 51.7% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.6% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 51.5% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 51.4% identity Open · Scan
M08921_2.00 NN 70-40% CisBP CCTCATTCTTCTTGGACATG 51.4% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 51.4% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 51.0% identity Open · Scan
M08342_2.00 NN 70-40% CisBP GCTCTGCCTCCCTCT 51.0% identity Open · Scan
M01531_2.00 NN 70-40% CisBP CCCCCCCTAAAT 50.9% identity Open · Scan
M00019_2.00 NN 70-40% CisBP ACCCCTAATT 50.8% identity Open · Scan
M08399_2.00 NN 70-40% CisBP TACTCTGGGGCCACATGACTC 50.7% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 50.6% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 50.5% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 50.5% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 50.5% identity Open · Scan
M07595_2.00 NN 70-40% CisBP GCCTGTTCCTCTCCC 50.2% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 50.2% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 50.2% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 50.0% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 50.0% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 50.0% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 50.0% identity Open · Scan
ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_B3KVF1_B3KVF1_HUMAN:195:244_1llm_D_1 ModCRE Homology model TTCGCGCGCGGG Region 195-244 · 1 3D model Open · Scan
TFS_tr_B3KVF1_B3KVF1_HUMAN:129:360_5wjq_D_1 ModCRE Homology model GGATTCTCCCCCGCCGCCCGCTTTCCCC Region 129-360 · 1 3D model Open · Scan
TFS_tr_B3KVF1_B3KVF1_HUMAN:133:366_5v3j_E_1 ModCRE Homology model TCCCCGCCCTGGGGCCTCCTTTC Region 133-366 · 1 3D model Open · Scan
TFS_tr_B3KVF1_B3KVF1_HUMAN:133:366_5v3m_C_1 ModCRE Homology model CGGCCCCGACCCACCGTTTTCCCC Region 133-366 · 1 3D model Open · Scan
TFS_tr_B3KVF1_B3KVF1_HUMAN:178:331_2i13_A_1 ModCRE Homology model TTGAGTCTGTTTACTATGTTT Region 178-331 · 1 3D model Open · Scan
TFS_tr_B3KVF1_B3KVF1_HUMAN:222:332_5ei9_E_1 ModCRE Homology model GGCCCCCCGCCGCGGCG Region 222-332 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 367 aa
129-366

Region 129-366 6 PWM

Residues
238 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 6 summary rows
Region 129-3666 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_B3KVF1_B3KVF1_HUMAN:195:244_1llm_D_1 1llm 195-244 View model · PDB
Predicted = Low TFS_tr_B3KVF1_B3KVF1_HUMAN:129:360_5wjq_D_1 5wjq 129-360 View model · PDB
Predicted = Low TFS_tr_B3KVF1_B3KVF1_HUMAN:133:366_5v3j_E_1 5v3j 133-366 View model · PDB
Predicted = Low TFS_tr_B3KVF1_B3KVF1_HUMAN:133:366_5v3m_C_1 5v3m 133-366 View model · PDB
Predicted = Low TFS_tr_B3KVF1_B3KVF1_HUMAN:178:331_2i13_A_1 2i13 178-331 View model · PDB
Predicted = Low TFS_tr_B3KVF1_B3KVF1_HUMAN:222:332_5ei9_E_1 5ei9 222-332 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 129:366 222 332 P:E · DNA:A,B 57.7% / 69.4% 100 View · PDB TFS_tr_B3KVF1_B3KVF1_HUMAN:222:332_5ei9_E_1
4 2i13 129:366 178 331 P:A · DNA:C,D 55.8% / 68.2% 100 View · PDB TFS_tr_B3KVF1_B3KVF1_HUMAN:178:331_2i13_A_1
1 5wjq 129:366 129 360 P:D · DNA:A,B 46.4% / 64.4% 82 View · PDB TFS_tr_B3KVF1_B3KVF1_HUMAN:129:360_5wjq_D_1
2 5v3m 129:366 133 366 P:C · DNA:A,B 43.0% / 65.5% 84 View · PDB TFS_tr_B3KVF1_B3KVF1_HUMAN:133:366_5v3m_C_1
3 5v3j 129:366 133 366 P:E · DNA:A,B 43.0% / 65.5% 84 View · PDB TFS_tr_B3KVF1_B3KVF1_HUMAN:133:366_5v3j_E_1
1 1llm 129:366 195,195 244,244 P:C,D · DNA:A,B 40.0% / 58.0% 57,58 View · PDB DIMER_tr_B3KVF1_B3KVF1_HUMAN:195:244_1llm_D_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
169-191PF00096Zinc finger, C2H2 typeoverlaps 129-366
197-219PF00096Zinc finger, C2H2 typeoverlaps 129-366
225-247PF00096Zinc finger, C2H2 typeoverlaps 129-366
253-275PF00096Zinc finger, C2H2 typeoverlaps 129-366
281-303PF00096Zinc finger, C2H2 typeoverlaps 129-366
309-331PF00096Zinc finger, C2H2 typeoverlaps 129-366
337-359PF00096Zinc finger, C2H2 typeoverlaps 129-366