ModCRE DB

Transcription factor

B3KVL3

cDNA FLJ16707 fis, clone UTERU2003321, highly similar to Zinc finger protein 546

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 426 aa

77 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M00950_2.00 NN 70+% CisBP GCAGCCCA 70.0% identity Open · Scan
Nearest Neighbor (70% - 40%)76
MotifPredictionSourceDNA bindingSupportLogoActions
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 68.2% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 61.7% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 61.7% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 61.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 61.1% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 61.1% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 61.1% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 61.1% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 61.1% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 60.4% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 60.2% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 60.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 60.0% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 59.8% identity Open · Scan
M07678_2.00 NN 70-40% CisBP CCCGCCCCCTCCTCCCCCTTCCCACCC 59.4% identity Open · Scan
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 59.0% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 58.6% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 58.1% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 58.1% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 57.8% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 57.7% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 57.6% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 57.3% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 57.3% identity Open · Scan
M08234_2.00 NN 70-40% CisBP GTCAACTTGACTGGGCCA 56.7% identity Open · Scan
M07684_2.00 NN 70-40% CisBP CCTGTTCTTGACTTT 56.5% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 56.5% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 56.5% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 56.4% identity Open · Scan
M07689_2.00 NN 70-40% CisBP ACCCAGGCTCCTTCCATCTTGTGGCTC 55.9% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 55.7% identity Open · Scan
M08292_2.00 NN 70-40% CisBP TGTATTCCTTGTCATGTGTGG 55.5% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 55.4% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 55.3% identity Open · Scan
M07588_2.00 NN 70-40% CisBP TCCTTCCCTCTTTCC 55.3% identity Open · Scan
M07638_2.00 NN 70-40% CisBP TGCAGCTCCCTGCCC 55.2% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 55.2% identity Open · Scan
M07693_2.00 NN 70-40% CisBP CTCCTGTGTGTGCCTTGGCTG 55.0% identity Open · Scan
M07691_2.00 NN 70-40% CisBP CCTGCAGCCACCTTGGCCTTG 54.9% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 54.6% identity Open · Scan
M07633_2.00 NN 70-40% CisBP CTCTCGTTGTGCCTTTGCCAT 54.5% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 54.5% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 54.4% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 54.4% identity Open · Scan
M04480_2.00 NN 70-40% CisBP ATTGATTACCCACCCTAC 54.3% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.0% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 54.0% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 54.0% identity Open · Scan
M08300_2.00 NN 70-40% CisBP CTGCCCAATTCAT 54.0% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 53.9% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 53.4% identity Open · Scan
M07657_2.00 NN 70-40% CisBP CCCCTGCATGTCCCCATTTTT 53.2% identity Open · Scan
M07777_2.00 NN 70-40% CisBP GCCAATTTCCGTGGTGTAAAT 53.2% identity Open · Scan
M07723_2.00 NN 70-40% CisBP CCGCTGCTCCCTGCT 52.9% identity Open · Scan
M08247_2.00 NN 70-40% CisBP AAAAATAACAAACGG 52.7% identity Open · Scan
M07660_2.00 NN 70-40% CisBP CCGCGCCTACCTGAGGGCGCGGGCCTGGGG 52.6% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 52.4% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 52.2% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 51.9% identity Open · Scan
M08335_2.00 NN 70-40% CisBP AGTCGTTGTCTG 51.8% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 51.7% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 51.6% identity Open · Scan
M04621_2.00 NN 70-40% CisBP AGCAATTCCGCTCA 51.2% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 51.2% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 51.2% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 50.6% identity Open · Scan
M07729_2.00 NN 70-40% CisBP CCAGACTGCCTGCCAAAACCCCCT 50.5% identity Open · Scan
M05853_2.00 NN 70-40% CisBP CCACCTTTAGCCATATCT 50.4% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 50.3% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.3% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 50.2% identity Open · Scan
M07731_2.00 NN 70-40% CisBP TTTCCCAGCAGCAACAGCACCGCCCCCCCC 50.2% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 50.2% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 50.0% identity Open · Scan
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 50.0% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 426 aa
180-424

Region 180-424 0 PWM

Residues
245 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5WJQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 180-4241 model
Actions
Predicted = Low TFS_B3KVL3:180:424_5wjq_D_1 5wjq 180-424 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
33-74PF01352KRAB boxNo overlap with loaded model regions
191-213PF00096Zinc finger, C2H2 typeoverlaps 180-424
219-241PF00096Zinc finger, C2H2 typeoverlaps 180-424
247-269PF00096Zinc finger, C2H2 typeoverlaps 180-424
275-297PF00096Zinc finger, C2H2 typeoverlaps 180-424
303-325PF00096Zinc finger, C2H2 typeoverlaps 180-424
331-353PF00096Zinc finger, C2H2 typeoverlaps 180-424
359-381PF00096Zinc finger, C2H2 typeoverlaps 180-424
387-409PF00096Zinc finger, C2H2 typeoverlaps 180-424