ModCRE DB

Transcription factor

B3KX41

cDNA FLJ44708 fis, clone BRACE3019071, highly similar to Homo sapiens cyclin D binding myb-like transcription factor 1 (DMTF1), mRNA

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 494 aa

6 Generated PWM 6 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE6
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B3KX41_B3KX41_HUMAN:40:64_2kdz_A_1 ModCRE Homology model AAAAACTTTTTTTAT Region 40-64 · 1 3D model Open · Scan
TFS_tr_B3KX41_B3KX41_HUMAN:40:76_1h88_C_1 ModCRE Homology model GGCTAAGGGGTCTT Region 40-76 · 1 3D model Open · Scan
TFS_tr_B3KX41_B3KX41_HUMAN:40:76_1h89_C_1 ModCRE Homology model GCCCGAAACGGAGCT Region 40-76 · 1 3D model Open · Scan
TFS_tr_B3KX41_B3KX41_HUMAN:40:76_1h8a_C_1 ModCRE Homology model GCCTAAACCTCCGGT Region 40-76 · 1 3D model Open · Scan
TFS_tr_B3KX41_B3KX41_HUMAN:40:76_1mse_C_1 ModCRE Homology model ATCCAGGTTGG Region 40-76 · 1 3D model Open · Scan
TFS_tr_B3KX41_B3KX41_HUMAN:40:76_1msf_C_1 ModCRE Homology model AACCAGTTTTG Region 40-76 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 494 aa
40-76

Region 40-76 6 PWM

Residues
37 aa
Domains
PF00249 · Myb-like DNA-binding domain
3D models
6 active PDBs · 5 summary rows
Templates
1H88, 1H89, 1H8A, 1MSE, 1MSF, 2KDZ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
6 active PDB models 5 summary rows
Region 40-766 models · 5 summary rows
Actions
Predicted = Low TFS_tr_B3KX41_B3KX41_HUMAN:40:64_2kdz_A_1 2kdz 40-64 View model · PDB
Predicted = Low TFS_tr_B3KX41_B3KX41_HUMAN:40:76_1h88_C_1 1h88 40-76 View model · PDB
Predicted = Low TFS_tr_B3KX41_B3KX41_HUMAN:40:76_1h89_C_1 1h89 40-76 View model · PDB
Predicted = Low TFS_tr_B3KX41_B3KX41_HUMAN:40:76_1h8a_C_1 1h8a 40-76 View model · PDB
Predicted = Low TFS_tr_B3KX41_B3KX41_HUMAN:40:76_1mse_C_1 1mse 40-76 View model · PDB
Predicted = Low TFS_tr_B3KX41_B3KX41_HUMAN:40:76_1msf_C_1 1msf 40-76 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1msf 33:88 40 76 P:C · DNA:A,B 40.5% / 62.2% 34 View · PDB TFS_tr_B3KX41_B3KX41_HUMAN:40:76_1msf_C_1
2 1mse 33:88 40 76 P:C · DNA:A,B 40.5% / 62.2% 34 View · PDB TFS_tr_B3KX41_B3KX41_HUMAN:40:76_1mse_C_1
3 1h8a 33:88 40 76 P:C · DNA:D,E 40.5% / 62.2% 34 View · PDB TFS_tr_B3KX41_B3KX41_HUMAN:40:76_1h8a_C_1
4 1h89 33:88 40 76 P:C · DNA:D,E 40.5% / 62.2% 31 View · PDB TFS_tr_B3KX41_B3KX41_HUMAN:40:76_1h89_C_1
5 1h88 33:88 40 76 P:C · DNA:D,E 40.5% / 62.2% 23 View · PDB TFS_tr_B3KX41_B3KX41_HUMAN:40:76_1h88_C_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
8-63PF00249Myb-like DNA-binding domainoverlaps 40-76