Region 1062-1088 5 PWM
- Residues
- 27 aa
- Domains
- PF13912 · C2H2-type zinc finger
- 3D models
- 5 active PDBs · 5 summary rows
- Templates
- 6ML3, 6ML4, 6ML6, 6ML7, 6WMI
- Sources
- Predicted = Low
Transcription factor
B3KXK2
cDNA FLJ45586 fis, clone BRTHA3014000, highly similar to Transcriptional-regulating factor 1
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 1176 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE5
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_B3KXK2_B3KXK2_HUMAN:1062:1087_6ml3_A_1 | ModCRE | Homology model | GGATCCACGC | Region 1062-1087 · 1 3D model | Open · Scan | |
| TFS_tr_B3KXK2_B3KXK2_HUMAN:1062:1088_6ml4_A_1 | ModCRE | Homology model | CCCCAGGAGG | Region 1062-1088 · 1 3D model | Open · Scan | |
| TFS_tr_B3KXK2_B3KXK2_HUMAN:1062:1088_6ml6_A_1 | ModCRE | Homology model | GCCCCGAAAA | Region 1062-1088 · 1 3D model | Open · Scan | |
| TFS_tr_B3KXK2_B3KXK2_HUMAN:1062:1088_6ml7_A_1 | ModCRE | Homology model | CCCCAGGGTG | Region 1062-1088 · 1 3D model | Open · Scan | |
| TFS_tr_B3KXK2_B3KXK2_HUMAN:1064:1084_6wmi_A_1 | ModCRE | Homology model | CTCAGAGGTA | Region 1064-1084 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
1176 aa
1062-1088
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 1062-10885 models · 5 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_B3KXK2_B3KXK2_HUMAN:1062:1087_6ml3_A_1 | 6ml3 | 1062-1087 | View model · PDB |
| Predicted = Low | TFS_tr_B3KXK2_B3KXK2_HUMAN:1062:1088_6ml4_A_1 | 6ml4 | 1062-1088 | View model · PDB |
| Predicted = Low | TFS_tr_B3KXK2_B3KXK2_HUMAN:1062:1088_6ml6_A_1 | 6ml6 | 1062-1088 | View model · PDB |
| Predicted = Low | TFS_tr_B3KXK2_B3KXK2_HUMAN:1062:1088_6ml7_A_1 | 6ml7 | 1062-1088 | View model · PDB |
| Predicted = Low | TFS_tr_B3KXK2_B3KXK2_HUMAN:1064:1084_6wmi_A_1 | 6wmi | 1064-1084 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 6wmi | 1059:1111 | 1064 | 1084 | P:A · DNA:E,F | 52.4% / 66.7% | 14 | View · PDB TFS_tr_B3KXK2_B3KXK2_HUMAN:1064:1084_6wmi_A_1 |
| 5 | 6ml3 | 1059:1111 | 1062 | 1087 | P:A · DNA:E,F | 38.5% / 61.5% | 23 | View · PDB TFS_tr_B3KXK2_B3KXK2_HUMAN:1062:1087_6ml3_A_1 |
| 2 | 6ml7 | 1059:1111 | 1062 | 1088 | P:A · DNA:E,F | 37.0% / 63.0% | 18 | View · PDB TFS_tr_B3KXK2_B3KXK2_HUMAN:1062:1088_6ml7_A_1 |
| 3 | 6ml6 | 1059:1111 | 1062 | 1088 | P:A · DNA:E,F | 37.0% / 63.0% | 18 | View · PDB TFS_tr_B3KXK2_B3KXK2_HUMAN:1062:1088_6ml6_A_1 |
| 4 | 6ml4 | 1059:1111 | 1062 | 1088 | P:A · DNA:E,F | 37.0% / 63.0% | 18 | View · PDB TFS_tr_B3KXK2_B3KXK2_HUMAN:1062:1088_6ml4_A_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 470-490 | PF13912 | C2H2-type zinc finger | No overlap with loaded model regions |
| 757-811 | PF01448 | ELM2 domain | No overlap with loaded model regions |
| 996-1011 | PF13912 | C2H2-type zinc finger | No overlap with loaded model regions |
| 1062-1087 | PF13912 | C2H2-type zinc finger | overlaps 1062-1088 |