ModCRE DB

Transcription factor

B4DDB5

Transcription initiation factor IIF subunit alpha

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 415 aa

4 Generated PWM 5 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE4
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B4DDB5_B4DDB5_HUMAN:5:64_6o9l_S_1 ModCRE Homology model GGACGTCCCCGA Region 5-64 · 1 3D model Open · Scan
TFS_tr_B4DDB5_B4DDB5_HUMAN:66:81_5iy6_S_1 ModCRE Homology model TTGA Region 66-81 · 1 3D model Open · Scan
TFS_tr_B4DDB5_B4DDB5_HUMAN:66:81_5iya_S_1 ModCRE Homology model TTGA Region 66-81 · 1 3D model Open · Scan
TFS_tr_B4DDB5_B4DDB5_HUMAN:66:81_6o9l_S_1 ModCRE Homology model CA Region 66-81 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 415 aa
5-64
66-81

Region 5-64 1 PWM

Residues
60 aa
Domains
PF05793 · Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
3D models
1 active PDB · 1 summary row
Templates
6O9L
Sources
Predicted = Low
Scan this region Show models

Region 66-81 3 PWM

Residues
16 aa
Domains
PF05793 · Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)
3D models
4 active PDBs
Templates
5IY6, 5IYA, 5IYB, 6O9L
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models 1 summary row
Region 5-641 model · 1 summary row
Actions
Predicted = Low TFS_tr_B4DDB5_B4DDB5_HUMAN:5:64_6o9l_S_1 6o9l 5-64 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6o9l 5:64 5 64 P:S · DNA:X,Y 95.0% / 95.0% 34 View · PDB TFS_tr_B4DDB5_B4DDB5_HUMAN:5:64_6o9l_S_1
Region 66-814 models
Actions
Predicted = Low TFS_tr_B4DDB5_B4DDB5_HUMAN:66:81_5iy6_S_1 5iy6 66-81 View model · PDB
Predicted = Low TFS_tr_B4DDB5_B4DDB5_HUMAN:66:81_5iya_S_1 5iya 66-81 View model · PDB
Predicted = Low TFS_tr_B4DDB5_B4DDB5_HUMAN:66:81_5iyb_S_1 5iyb 66-81 View model · PDB
Predicted = Low TFS_tr_B4DDB5_B4DDB5_HUMAN:66:81_6o9l_S_1 6o9l 66-81 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
59-415PF05793Transcription initiation factor IIF, alpha subunit (TFIIF-alpha)overlaps 5-64overlaps 66-81