Region 558-586 2 PWM
- Residues
- 29 aa
- Domains
- No overlapping PFAM annotation recorded
- 3D models
- 2 active PDBs · 2 summary rows
- Templates
- 4GZN, 4M9V
- Sources
- Predicted = Low
Transcription factor
B4DDN6
cDNA FLJ54422, highly similar to Teashirt homolog 3
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 663 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known0
No generated PWM in this category.
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE5
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| TFS_tr_B4DDN6_B4DDN6_HUMAN:558:586_4gzn_C_1 | ModCRE | Homology model | TTCACAGAT | Region 558-586 · 1 3D model | Open · Scan | |
| TFS_tr_B4DDN6_B4DDN6_HUMAN:558:586_4m9v_C_1 | ModCRE | Homology model | TCAGCAGAT | Region 558-586 · 1 3D model | Open · Scan | |
| TFS_tr_B4DDN6_B4DDN6_HUMAN:623:646_6wmi_A_1 | ModCRE | Homology model | CGGGCAATCA | Region 623-646 · 1 3D model | Open · Scan | |
| TFS_tr_B4DDN6_B4DDN6_HUMAN:623:650_6e93_A_1 | ModCRE | Homology model | AACGGGTGGG | Region 623-650 · 1 3D model | Open · Scan | |
| TFS_tr_B4DDN6_B4DDN6_HUMAN:623:650_6e94_A_1 | ModCRE | Homology model | AACGGGGCGG | Region 623-650 · 1 3D model | Open · Scan |
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
663 aa
558-586
623-650
Region 623-650 3 PWM
- Residues
- 28 aa
- Domains
- PF12874 · Zinc-finger of C2H2 type
- 3D models
- 3 active PDBs · 3 summary rows
- Templates
- 6E93, 6E94, 6WMI
- Sources
- Predicted = Low
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
5 active PDB models
5 summary rows
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 558-5862 models · 2 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_B4DDN6_B4DDN6_HUMAN:558:586_4gzn_C_1 | 4gzn | 558-586 | View model · PDB |
| Predicted = Low | TFS_tr_B4DDN6_B4DDN6_HUMAN:558:586_4m9v_C_1 | 4m9v | 558-586 | View model · PDB |
Model-summary evidence imported for this region.
Region 623-6503 models · 3 summary rows
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | TFS_tr_B4DDN6_B4DDN6_HUMAN:623:646_6wmi_A_1 | 6wmi | 623-646 | View model · PDB |
| Predicted = Low | TFS_tr_B4DDN6_B4DDN6_HUMAN:623:650_6e93_A_1 | 6e93 | 623-650 | View model · PDB |
| Predicted = Low | TFS_tr_B4DDN6_B4DDN6_HUMAN:623:650_6e94_A_1 | 6e94 | 623-650 | View model · PDB |
Model-summary evidence imported for this region.
| Rank | Template | Domain | N-tails | C-tails | Chains | Identity / similarity | Coverage | Model file |
|---|---|---|---|---|---|---|---|---|
| 1 | 6e93 | 623:652 | 623 | 650 | P:A · DNA:C,D | 35.7% / 57.1% | 25 | View · PDB TFS_tr_B4DDN6_B4DDN6_HUMAN:623:650_6e93_A_1 |
| 2 | 6e94 | 623:652 | 623 | 650 | P:A · DNA:C,D | 35.7% / 57.1% | 25 | View · PDB TFS_tr_B4DDN6_B4DDN6_HUMAN:623:650_6e94_A_1 |
| 5 | 6wmi | 623:652 | 623 | 646 | P:A · DNA:E,F | 33.3% / 66.7% | 16 | View · PDB TFS_tr_B4DDN6_B4DDN6_HUMAN:623:646_6wmi_A_1 |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 481-545 | PF26094 | Teashirt homolog 3-like, homeodomain | No overlap with loaded model regions |
| 623-642 | PF12874 | Zinc-finger of C2H2 type | overlaps 623-650 |