ModCRE DB

Transcription factor

B4DED3

Sal-like protein 2 (Zinc finger protein Spalt-2)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 846 aa

26 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)21
MotifPredictionSourceDNA bindingSupportLogoActions
M08979_2.00 NN 70-40% CisBP CCCACCCTCC 68.4% identity Open · Scan
M00641_2.00 NN 70-40% CisBP ATTGACCACT 60.0% identity Open · Scan
M03702_2.00 NN 70-40% CisBP GACCCCCCACGACGC 56.6% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 54.7% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 54.7% identity Open · Scan
M01022_2.00 NN 70-40% CisBP GGACCACCCAC 53.8% identity Open · Scan
M01024_2.00 NN 70-40% CisBP GGACCACCCA 53.8% identity Open · Scan
MA0734.1 NN 70-40% JASPAR GCGACCACACTG 53.8% identity Open · Scan
M08252_2.00 NN 70-40% CisBP CCGGCTCCAGCACCC 52.8% identity Open · Scan
M00954_2.00 NN 70-40% CisBP CTACCCTA 52.5% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 51.2% identity Open · Scan
M00608_2.00 NN 70-40% CisBP CCTGTTG 51.0% identity Open · Scan
M03691_2.00 NN 70-40% CisBP ATGCAACAGGTGG 50.9% identity Open · Scan
M06087_2.00 NN 70-40% CisBP ACCACCTGTTGCA 50.9% identity Open · Scan
M10203_2.00 NN 70-40% CisBP CCCCAAACCACCCC 50.8% identity Open · Scan
MA0073.1 NN 70-40% JASPAR CCCCAAACCACCCCCCCCCA 50.8% identity Open · Scan
M00765_2.00 NN 70-40% CisBP CCCGCCCCC 50.0% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 50.0% identity Open · Scan
M05859_2.00 NN 70-40% CisBP GGCCACGCCCACT 50.0% identity Open · Scan
MA0685.1 NN 70-40% JASPAR TAAGCCACGCCCCCTTT 50.0% identity Open · Scan
MA0744.1 NN 70-40% JASPAR ATGCAACAGGTGG 50.0% identity Open · Scan
ModCRE5
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_B4DED3_B4DED3_HUMAN:177:226_3uk3_C_1 ModCRE Homology model TATGGGAATGT Region 177-226 · 1 3D model Open · Scan
TFS_tr_B4DED3_B4DED3_HUMAN:177:226_4is1_C_1 ModCRE Homology model AACCTGAATGT Region 177-226 · 1 3D model Open · Scan
TFS_tr_B4DED3_B4DED3_HUMAN:177:228_4is1_D_1 ModCRE Homology model TGTGTCCACC Region 177-228 · 1 3D model Open · Scan
TFS_tr_B4DED3_B4DED3_HUMAN:495:518_1f2i_G_1 ModCRE Homology model GGGGCGTCCTG Region 495-518 · 1 3D model Open · Scan
TFS_tr_B4DED3_B4DED3_HUMAN:495:518_1f2i_H_1 ModCRE Homology model TTAAAGTCTCG Region 495-518 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 846 aa
175-233
433-518

Region 175-233 3 PWM

Residues
59 aa
Domains
PF00096 · Zinc finger, C2H2 type
3D models
7 active PDBs · 4 summary rows
Templates
1LLM, 3UK3, 4IS1, 8A4I, 8CUC, 8E3E
Sources
Predicted = Low
Scan this region Show models

Region 433-518 2 PWM

Residues
86 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
4 active PDBs · 2 summary rows
Templates
1F2I, 6E93, 6E94
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 6 summary rows
Region 175-2337 models · 4 summary rows
Actions
Predicted = Low DIMER_tr_B4DED3_B4DED3_HUMAN:177:222_1llm_D_1 1llm 177-222 View model · PDB
Predicted = Low TFS_tr_B4DED3_B4DED3_HUMAN:175:226_8a4i_I_1 8a4i 175-226 View model · PDB
Predicted = Low TFS_tr_B4DED3_B4DED3_HUMAN:175:226_8cuc_F_1 8cuc 175-226 View model · PDB
Predicted = Low TFS_tr_B4DED3_B4DED3_HUMAN:177:226_3uk3_C_1 3uk3 177-226 View model · PDB
Predicted = Low TFS_tr_B4DED3_B4DED3_HUMAN:177:226_4is1_C_1 4is1 177-226 View model · PDB
Predicted = Low TFS_tr_B4DED3_B4DED3_HUMAN:177:228_4is1_D_1 4is1 177-228 View model · PDB
Predicted = Low TFS_tr_B4DED3_B4DED3_HUMAN:177:233_8e3e_A_1 8e3e 177-233 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 8cuc 173:245 175 226 P:F · DNA:A,B 61.5% / 75.0% 96 View · PDB TFS_tr_B4DED3_B4DED3_HUMAN:175:226_8cuc_F_1
2 8a4i 173:245 175 226 P:I · DNA:A,B 61.5% / 75.0% 96 View · PDB TFS_tr_B4DED3_B4DED3_HUMAN:175:226_8a4i_I_1
5 8e3e 173:245 177 233 P:A · DNA:X,Y 45.6% / 63.2% 51 View · PDB TFS_tr_B4DED3_B4DED3_HUMAN:177:233_8e3e_A_1
1 1llm 173:245 177,177 222,222 P:C,D · DNA:A,B 39.1% / 58.7% 52,54 View · PDB DIMER_tr_B4DED3_B4DED3_HUMAN:177:222_1llm_D_1
Region 433-5184 models · 2 summary rows
Actions
Predicted = Low TFS_tr_B4DED3_B4DED3_HUMAN:433:518_6e93_A_1 6e93 433-518 View model · PDB
Predicted = Low TFS_tr_B4DED3_B4DED3_HUMAN:433:518_6e94_A_1 6e94 433-518 View model · PDB
Predicted = Low TFS_tr_B4DED3_B4DED3_HUMAN:495:518_1f2i_G_1 1f2i 495-518 View model · PDB
Predicted = Low TFS_tr_B4DED3_B4DED3_HUMAN:495:518_1f2i_H_1 1f2i 495-518 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
3 6e93 173:245 433 518 P:A · DNA:C,D 38.4% / 52.3% 73 View · PDB TFS_tr_B4DED3_B4DED3_HUMAN:433:518_6e93_A_1
4 6e94 173:245 433 518 P:A · DNA:C,D 38.4% / 52.3% 73 View · PDB TFS_tr_B4DED3_B4DED3_HUMAN:433:518_6e94_A_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
204-226PF00096Zinc finger, C2H2 typeoverlaps 175-233
462-484PF00096Zinc finger, C2H2 typeoverlaps 433-518
495-516PF00096Zinc finger, C2H2 typeoverlaps 433-518
716-739PF13912C2H2-type zinc fingerNo overlap with loaded model regions