Region 1-223 0 PWM
- Residues
- 223 aa
- Domains
- PF00554 · Rel homology DNA-binding domain PF16179 · Rel homology dimerisation domain
- 3D models
- 1 active PDB
- Templates
- 1IMH
- Sources
- Structure model
Transcription factor
B4DER8
cDNA FLJ61216, highly similar to Nuclear factor of activated T-cells, cytoplasmic 1
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 471 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known1
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M03449_2.00 | Known | CisBP | AGGGAAAATAATTTTCCATT | Direct PWM | Open · Scan |
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE0
No generated PWM in this category.
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
471 aa
1-223
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 1-2231 model
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_B4DER8:1:223_1imh_D_1 | 1imh | 1-223 | View model · PDB |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 2-116 | PF00554 | Rel homology DNA-binding domain | overlaps 1-223 |
| 126-224 | PF16179 | Rel homology dimerisation domain | overlaps 1-223 |